Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g2121 ATGAACAACAATAGAGCGCGGTACCCACCTGGGATCGGATTAGGTCGTGGAAATGGTGGTTTCAACACTGGGTTTCAACCAAGGCCACCTCAACAACAGTATGTGCAAAGGCACATGGTTCAGCAGCAGCATCCTCAGCACTATCAGCACTATCAGCAGAATCAGCAACAACATCAACAGCAGCAGCAACAACAACAACAACAGCAACAACAGTGGTTGAGAAGGACCCAATTGGGTGGCGGTGGAAGTAATGACAATAACGTTGTTGAGGAGGTTGAGAAGACCGTACAGTCTGAAGCCGTGGACTCAAGTTCACAAGATTGGAAGGCAAGATTAAAGGTTCCACCACCTGATACACGCTATAAGACTGAGGATGTAACGGCAACTAAAGGAAATGAATTCGAGGATTACTTTTTGAAGCGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAGAGACCTTCACCAATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGCAGTGACATTCTTGCAAGGGCTAAGAATGGAACAGGCAAAACAGCTGCATTTTGTATTCCTGCATTGGAAAAAATTGATCAAGATAATAATGTTATTCAAGTTGTTATATTGGTCCCAACCAGAGAATTGGCCTTGCAGACTTCTCAAGTGTGTAAAGAACTCGGAAAACATTTGAAAATTCAGGTTATGGTAACCACTGGTGGTACCAGCCTAAAAGATGACATTATGCGTTTATATCAACCAGTTCATTTGCTGGTTGGAACTCCAGGAAGAATTTTGGATCTTGCAAAGAAGGGCGTTTGTGTTTTGAAAGATTGCTCTATGCTAGTTATGGATGAGGCTGATAAGCTTCTGTCCCCGGAGTTCCAACCTTCAATAGAGCAGCTGATTCAATTTCTTCCTCCAACCCGTCAAATCCTGATGTTTTCTGCAACATTTCCTGTTACTGTAAAGGACTTCAAAGATAGATATCTTCGAAAGCCATATATCATTAATCTTATGGATGAGCTAACTCTGAAGGGTATCACACAGTATTATGCATTTGTGGAAGAGAGACAGAAAGTCCACTGCCTAAATACTCTTTTCTCTAAGCTTCAAATAAACCAGTCAATCATCTTCTGTAATTCAGTGAATCGGGTTGAACTCCTTGCCAAGAAAATAACAGAACTTGGATATTCTTGTTTCTATATTCATGCAAAGATGTTGCAAGACCACCGTAACAGAGTATTTCACGATTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGATCTTTTTACTAGAGGTATAGACATCCAAGCAGTCAACGTTGTTATTAACTTTGATTTTCCGAAGAACTCAGAAACCTATCTGCACAGGGTTGGTCGTTCAGGAAGGTTTGGACACCTTGGTTTAGCAGTAAACTTGATTACATATGAGGATCGCTTCAATTTATATAGGATTGAACAAGAGCTTGGCACTGAAATAAAACAAATTCCACCACATATTGATCAGGCTATATATTGCCGGTGA 1521 0.4109 MNNNRARYPPGIGLGRGNGGFNTGFQPRPPQQQYVQRHMVQQQHPQHYQHYQQNQQQHQQQQQQQQQQQQQWLRRTQLGGGGSNDNNVVEEVEKTVQSEAVDSSSQDWKARLKVPPPDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLRKPYIINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g2121 506 Gene3D - 337 506 IPR027417 -
Ahy4g2121 506 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 343 503 IPR001650 -
Ahy4g2121 506 CDD DEADc_DDX6 134 334 - -
Ahy4g2121 506 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 279 287 IPR000629 -
Ahy4g2121 506 Gene3D - 86 336 IPR027417 -
Ahy4g2121 506 Pfam DEAD/DEAH box helicase 157 321 IPR011545 GO:0003676|GO:0005524
Ahy4g2121 506 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 12 12 506 - -
Ahy4g2121 506 CDD SF2_C_DEAD 344 473 - -
Ahy4g2121 506 Coils Coil 48 71 - -
Ahy4g2121 506 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 12 506 - -
Ahy4g2121 506 Pfam Helicase conserved C-terminal domain 358 464 IPR001650 -
Ahy4g2121 506 MobiDBLite consensus disorder prediction 24 105 - -
Ahy4g2121 506 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 163 333 IPR014001 -
Ahy4g2121 506 MobiDBLite consensus disorder prediction 1 123 - -
Ahy4g2121 506 SMART helicmild6 383 464 IPR001650 -
Ahy4g2121 506 SMART ultradead3 151 347 IPR014001 -
Ahy4g2121 506 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 132 160 IPR014014 GO:0003724
Ahy4g2121 506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 486 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g2121 Ahy-Chr4 115385049 115390697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g2121 132 503 Eukaryotic Initiation Factors Gene Family AT3G19760 38.235 5.47e-95 292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g2403 14 127368591 127374202 Ahy4g2121 4 115385049 115390697 hybridization