Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g2117 ATGTCATTCACAGGAACTTTGGACAAATGCAAGGCTTGTGACAAAACTGTTTATGTGGTTGATTTGTTAACTCTTGAAGGTATACCTTACCATAAAAACTGCTTCAGATGCACTCACTGCAAGGGTTATCTTACGATGAGCACCTATTCCTCAATGGATGGTGTCCTGTATTGCAAGACACACTTTGAACAGCTTTTCAAGGAATCTGGAAATTTTAGTAAGAACTTTCAAACAGCAAAGCCTTCTGAAAAATCAAATGATGGGAACAAGGCTCCAAGCAGACTCTCCTCCATGTTTAGTGGAACTCTTGACAAATGCTCAGTTTGTGGAAAAACAGTGTATCCACTGGAGAAGATGTCGCTGGAAGGAGAGTGCTATCACAAGACATGCTTTAGGTGTGCTCATGCAGGTTGTCCTCTGACACACTCCAACTATGCTGCCCTTGATGGTGTCCTGTATTGCAAGCACCATTTCCAGCAGCTCTTCATGGAGAAGGGTAACTACAACCATGTACTCCAGGCTGCTAAGGACAAAAAGGTCAATGCCACTCCACCTTCTGAACAAGCCGATGCTGAAGATGGCGAGAAGCCGGAGTCCGAGGAGAAGAAAGAGGAAGAAGAAGAAGCAGCTCATGAGGAAGAAGAATCTAAGGAAGAGGAAGAGGAAAAGAAAGATGAGGACACTTAG 687 0.4396 MSFTGTLDKCKACDKTVYVVDLLTLEGIPYHKNCFRCTHCKGYLTMSTYSSMDGVLYCKTHFEQLFKESGNFSKNFQTAKPSEKSNDGNKAPSRLSSMFSGTLDKCSVCGKTVYPLEKMSLEGECYHKTCFRCAHAGCPLTHSNYAALDGVLYCKHHFQQLFMEKGNYNHVLQAAKDKKVNATPPSEQADAEDGEKPESEEKKEEEEEAAHEEEESKEEEEEKKDEDT* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g2117 228 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Ahy4g2117 228 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 171 - -
Ahy4g2117 228 Pfam LIM domain 106 161 IPR001781 -
Ahy4g2117 228 Pfam LIM domain 10 65 IPR001781 -
Ahy4g2117 228 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Ahy4g2117 228 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Ahy4g2117 228 MobiDBLite consensus disorder prediction 199 228 - -
Ahy4g2117 228 Coils Coil 196 226 - -
Ahy4g2117 228 Gene3D Cysteine Rich Protein 5 72 - -
Ahy4g2117 228 Gene3D Cysteine Rich Protein 102 170 - -
Ahy4g2117 228 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 206 - -
Ahy4g2117 228 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Ahy4g2117 228 SMART lim_4 9 61 IPR001781 -
Ahy4g2117 228 SMART lim_4 105 157 IPR001781 -
Ahy4g2117 228 PANTHER OS06G0237300 PROTEIN 1 206 IPR045268 GO:0051015
Ahy4g2117 228 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Ahy4g2117 228 MobiDBLite consensus disorder prediction 176 228 - -
Ahy4g2117 228 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Ahy4g2117 228 CDD LIM1_SF3 6 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g2117 Ahy-Chr4 115351413 115353289 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Ahy4g2117 LIM 3.40E-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g2117 - K09377 gmx:100779513 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g2399 14 127327545 127329916 Ahy4g2117 4 115351413 115353289 hybridization
Ahy4g2117 4 115351413 115353289 Ahy12g0026 12 1305508 1306852 PCT
Ahy12g0026 12 1305508 1306852 Ahy4g2117 4 115351413 115353289 PCT