Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g1968 ATGAGTGCAAGCACAAGCCGTGGCGGCGGCCGCGGCGGCGGTAGCAGTGGCGCTAGTGGGAGTGGTACCAAAGGTAAGGGTAGTGGCGGTCCTTGCGGCGCTTGCAAGTTTCTGAGGAAGAAATGTGATCCGGGATGTGTCTTTGCTCCGTACTTCGATCCTGATCAAGGTGCAATCTACTTTGCATCGGTGCACAAGGTTTTTGGGGCTAGCAACGTTGGTAAGCTTCTTTCCAAAATTCCAGTTCATAAGAGGCTTGATGCTGTTATTAGTATTTGTTATGAAGCACAAGCACGAATGAGAGACCCTGTTTATGGATGTGTTGGTCAAATCTGTACCCTTCAACAACAGGTGTTGGCTTTACAAGCTGAACTCTCATTCTTACAAAATCATCTTGCTACAATGGAGATACGACAACCGCCACCAATTCCTCCAACGCAAGGAGTACCGACATCACCTATTTTCTCAGTTGCAGACTTACCAACGGTTGTGGGTGTTGCCCCCACCACCTTATCAATGCCGGCCACTTTTGATCCATCTTCCCACTTTGATCCAGCAACTTGGGCTATGTATCAACGGGCCATGATGGACCCACGGCAATACATGGCTGTTTCAAGCCCAATAGGCCCAACTGCTAGTGGTGATGTTGATCTCCAAACAGTTGCATGTGAGCTCATCAATAGGCACGTGCCTTTGCAAGCACCACCTCAGACTTCTGGTTCCAATGTTGCATCGACGCCAGCTCCATCACTTAGTTCTTCTAAGTGA 768 0.4909 MSASTSRGGGRGGGSSGASGSGTKGKGSGGPCGACKFLRKKCDPGCVFAPYFDPDQGAIYFASVHKVFGASNVGKLLSKIPVHKRLDAVISICYEAQARMRDPVYGCVGQICTLQQQVLALQAELSFLQNHLATMEIRQPPPIPPTQGVPTSPIFSVADLPTVVGVAPTTLSMPATFDPSSHFDPATWAMYQRAMMDPRQYMAVSSPIGPTASGDVDLQTVACELINRHVPLQAPPQTSGSNVASTPAPSLSSSK* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g1968 255 MobiDBLite consensus disorder prediction 232 255 - -
Ahy4g1968 255 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 230 - -
Ahy4g1968 255 MobiDBLite consensus disorder prediction 1 23 - -
Ahy4g1968 255 Pfam Lateral organ boundaries (LOB) domain 31 129 IPR004883 -
Ahy4g1968 255 ProSiteProfiles LOB domain profile. 30 132 IPR004883 -
Ahy4g1968 255 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 1 230 - -
Ahy4g1968 255 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g1968 Ahy-Chr4 111959420 111977654 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g1968 34 228 AS2 family AT2G45420 51.942 1.68e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ahy4g1968 LOB 2.90E-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g1968 K21994 - rcu:8270648 236.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g2231 14 122288927 122306964 Ahy4g1968 4 111959420 111977654 hybridization
Ahy4g1968 4 111959420 111977654 Ahy12g2388 12 112013414 112019192 PCT
Ahy4g1968 4 111959420 111977654 Ahy2g2063 2 95883585 95889736 PCT
Ahy12g2388 12 112013414 112019192 Ahy4g1968 4 111959420 111977654 PCT
Ahy2g2063 2 95883585 95889736 Ahy4g1968 4 111959420 111977654 PCT