Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g1962 ATGGAGGCAAGAGAAGCTATTAGCTCTGGGGTTACGGTGATAGGGGCGGAAGCTCCCTCTGCATACCATGTGGCACCAAGGAGTGAAGCTCCGAGCCAAGTTCCTGGCCCGGATGCAGCTGCTAATGCTGCTCTTGGTGTTTCGCCCGTGAGTGTGGGATTGGATGGAACAACAGTTAAGAAAAAACGTGGTAGGCCAAGGAAGTATGGACCGGATGGATCGGTTAATATGGCATTGTCACCATTGCCAATTTCTTCTTCGGCTCCGTCTTCTAACGAATTTTCGAGCTTCCATTCAAGTGGCAAGCGAGGGAAATCGCGGGGTATGGAGTACAAGCACTCAAAGAAATTCGGAGGAGGGGATATTCTAGGAGATTCCATGGGTACAAGCTTTATGCCCCATATCATTACTGTCAATGCTGGCGAGGACATCACAATGAAGGTTATATCGTTTTCTCAACAAGGACCACGAGCTATATGCATACTATCTGCTACTGGTGTAATTTCAAATGTTACGCTTCGCCAGCCTGATTCTTCAGGAGGAACTTTGACCTATGAGGGTCGTTTCGAGATACTTTCCTTGACTGGATCATTTATGCCTACTGACAACGAAGGAACGAGAAGCCGGTCAGGTGGGATGAGTGTCACCTTGTCCAGCCCTGATGGCCGTGTCTTAGGTGGTGGCGTTGCTGGTCTTCTTGTAGCTGCCAGTCCTGTGCAGGTGGTTGTTGGAAGTTTTCTGCCAAGCAACCAGCAAGATCCGAAACCAAAGAAGCAGAAGCATGATTACGCACCACCACCAGCAGTTAACCCCCCCGCCGTTGCAGTGTCCTCTGCGCCACCACCCTCAACTAATGGCGATAAAGAGGATGTCATGGGTGGGCACGTGATGCAACACAATCCCGGAGCCTTCAACTCTAGCCTCACTCCTCCCTCGGCCTTCCGAAGGGACAGCTGGGTTAACATGCATTCCATGCCGGACTCGATTAAATCCACCACGGATATTAACATATCTTTGCCTGATGATTGA 1029 0.5024 MEAREAISSGVTVIGAEAPSAYHVAPRSEAPSQVPGPDAAANAALGVSPVSVGLDGTTVKKKRGRPRKYGPDGSVNMALSPLPISSSAPSSNEFSSFHSSGKRGKSRGMEYKHSKKFGGGDILGDSMGTSFMPHIITVNAGEDITMKVISFSQQGPRAICILSATGVISNVTLRQPDSSGGTLTYEGRFEILSLTGSFMPTDNEGTRSRSGGMSVTLSSPDGRVLGGGVAGLLVAASPVQVVVGSFLPSNQQDPKPKKQKHDYAPPPAVNPPAVAVSSAPPPSTNGDKEDVMGGHVMQHNPGAFNSSLTPPSAFRRDSWVNMHSMPDSIKSTTDINISLPDD* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g1962 342 CDD DUF296 133 246 IPR005175 -
Ahy4g1962 342 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 341 IPR039605 GO:0003680
Ahy4g1962 342 MobiDBLite consensus disorder prediction 79 102 - -
Ahy4g1962 342 MobiDBLite consensus disorder prediction 24 110 - -
Ahy4g1962 342 Gene3D - 133 262 - -
Ahy4g1962 342 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 341 - -
Ahy4g1962 342 SUPERFAMILY AF0104/ALDC/Ptd012-like 130 249 - -
Ahy4g1962 342 ProSiteProfiles PPC domain profile profile. 128 267 IPR005175 -
Ahy4g1962 342 MobiDBLite consensus disorder prediction 247 293 - -
Ahy4g1962 342 Pfam Plants and Prokaryotes Conserved (PCC) domain 133 246 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g1962 Ahy-Chr4 111705868 111709667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g1962 10 263 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 57.394 1.69e-94 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g1962 - - gmx:100777213 464.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g2227 14 122093919 122097629 Ahy4g1962 4 111705868 111709667 hybridization
Ahy4g1962 4 111705868 111709667 Ahy12g2385 12 111912764 111917492 PCT
Ahy4g1962 4 111705868 111709667 Ahy2g2060 2 95792580 95797352 PCT
Ahy12g2385 12 111912764 111917492 Ahy4g1962 4 111705868 111709667 PCT
Ahy2g2060 2 95792580 95797352 Ahy4g1962 4 111705868 111709667 PCT