Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g1899 ATGCTGAGCAAAGCCATGGGATTTAGAAACTTGGGGCTACTTGGATCATTTGCCAAAGAGGGGTTGGAAAAAGCATTCTCTCTTGGAAAGTTCTTCTGTTTTCTACATGTCACCGACACCTATTTGGTCACCTTTGTTGTGACATCTGGTCCCAGCATGCTTCCCACAATAGATTTGATCCCAACAATGTTTTTGGGTGAAAGGATCTCAACTAGATTTGGTAAAGTTACTCGTGGAGATATTGTGATTATTCGCTCCCCTCAAAACCCTAGGAAGCTTATTGCTAAACGATTGGCTGGAATGGAGGATGATACTGTTACATACATTTCTAACCCTGATGAGCCTGATAAGCAGGAAACTATTGTGGTTCCAAAGGGTCACGTTTGGATACAGGGTGATAATGCATATAAATCCAATGATTCAAGGAATTTTGGTGCTGTTCCTTATGGACTTATTCAGCACAGGCTATTTTGGAGGGTATGGCCAATCAAAGGTTTTGGACCTTTCTGGAAACACTGA 519 0.4181 MLSKAMGFRNLGLLGSFAKEGLEKAFSLGKFFCFLHVTDTYLVTFVVTSGPSMLPTIDLIPTMFLGERISTRFGKVTRGDIVIIRSPQNPRKLIAKRLAGMEDDTVTYISNPDEPDKQETIVVPKGHVWIQGDNAYKSNDSRNFGAVPYGLIQHRLFWRVWPIKGFGPFWKH* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g1899 172 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 6 171 - -
Ahy4g1899 172 CDD S26_SPase_I 45 153 IPR019533 GO:0004252|GO:0006465
Ahy4g1899 172 PANTHER PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN 6 171 - -
Ahy4g1899 172 TIGRFAM sigpep_I_bact: signal peptidase I 31 163 IPR000223 GO:0006508|GO:0008236|GO:0016020
Ahy4g1899 172 SUPERFAMILY LexA/Signal peptidase 40 170 IPR036286 -
Ahy4g1899 172 PRINTS Bacterial leader peptidase 1 (S26A) family signature 41 57 IPR000223 GO:0006508|GO:0008236|GO:0016020
Ahy4g1899 172 PRINTS Bacterial leader peptidase 1 (S26A) family signature 123 142 IPR000223 GO:0006508|GO:0008236|GO:0016020
Ahy4g1899 172 PRINTS Bacterial leader peptidase 1 (S26A) family signature 94 106 IPR000223 GO:0006508|GO:0008236|GO:0016020
Ahy4g1899 172 ProSitePatterns Signal peptidases I signature 3. 128 141 IPR019758 GO:0004252|GO:0016021
Ahy4g1899 172 Gene3D Umud Fragment, subunit A 38 170 - -
Ahy4g1899 172 Pfam Signal peptidase, peptidase S26 118 161 IPR019533 GO:0004252|GO:0006465
Ahy4g1899 172 Pfam Signal peptidase, peptidase S26 33 108 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g1899 Ahy-Chr4 110224555 110227483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g1899 53 169 MADS-box Gene Family AT1G29960 53.846 5.09e-43 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g1899 K09647 - csin:114265272 221.861