Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g1872 ATGGTTATTACGGAGAATATTAGTAATGGTAATAATTTATTGGGTCGTAGGAAGGCAATTGAGGAGCTTGAGAAGGGTCGTGAATTTGCAAACAAGCTTAGGGTTGTGATCAGTGGTGGTGAAGGGGGTGTTGATGGTGAACAACTTGTGGAGAAGGTTCTTATGTCATTCACAAACTCACTCTTGATCTTGAACAAGAACACTGGTTCTAATAATTGTGATGAGGTCTATGATGTTCCTTCTTCATGTGGGATCAATCCAACCAAGTCTGAGGATTCACTTGAGAGTAATTGCAAGAGCTCCGTTCATAAAGAACGTAGAGGGTGTTACAAGAGAAGAAGGACTTCACAAGTATTGGAGAAGGAGTCTGAAGCTCCAATTGATGATGGTCATCAGTGGAGAAAGTATGGCCAAAAAGTTATCCTTAATACCAAACATCCAAGGAACTATTACAGATGCACTCACAAATATGACCAAGGTTGTCTAGCAACAAAACAAGTGCAACAGGTTGAAGATGAACCAACACTTTACAAGACCACATACTATGGAAACCACACTTGTAGGAACAACCTGAACCCTACAATCATATTGGATGAATCCAATGATTCTCCTTCACAATCTTCAATGTTCCTCAGCTTTGATAATTCCCTACCAACAAAACAAGAATGTCCTATTTTCCTCTCATCATCATCTTTAGTAATCAAGAAGGAAGAGGAGTTCAAGGAGGAGGACCTGAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGTTCCTTCATGTTCTTCAAATGATTACATGATATCTTCGGAGCTTACTTTTGATAACTACTCAACGCATCATCATGTTAATGCTTTATCATCAACACTTGACTCAGATGATGTTATTTCTTATGATCCTTCTCAGCTTGATGATGCCATTGAGCATTTCTTTGTTACTAATATATATTGA 969 0.3643 MVITENISNGNNLLGRRKAIEELEKGREFANKLRVVISGGEGGVDGEQLVEKVLMSFTNSLLILNKNTGSNNCDEVYDVPSSCGINPTKSEDSLESNCKSSVHKERRGCYKRRRTSQVLEKESEAPIDDGHQWRKYGQKVILNTKHPRNYYRCTHKYDQGCLATKQVQQVEDEPTLYKTTYYGNHTCRNNLNPTIILDESNDSPSQSSMFLSFDNSLPTKQECPIFLSSSSLVIKKEEEFKEEDLNNNNNNNNNNNNNNNNNNVPSCSSNDYMISSELTFDNYSTHHHVNALSSTLDSDDVISYDPSQLDDAIEHFFVTNIY* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g1872 322 SUPERFAMILY WRKY DNA-binding domain 125 188 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ahy4g1872 322 PANTHER WRKY TRANSCRIPTION FACTOR 70-RELATED 13 289 - -
Ahy4g1872 322 ProSiteProfiles WRKY domain profile. 122 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy4g1872 322 Pfam WRKY DNA -binding domain 128 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy4g1872 322 SMART WRKY_cls 127 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy4g1872 322 MobiDBLite consensus disorder prediction 243 268 - -
Ahy4g1872 322 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 13 289 IPR044810 GO:0003700
Ahy4g1872 322 MobiDBLite consensus disorder prediction 246 268 - -
Ahy4g1872 322 Gene3D WRKY domain 112 189 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g1872 Ahy-Chr4 109322728 109325165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g1872 16 190 WRKY Transcription Factor Family AT3G56400 41.899 4.01e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ahy4g1872 WRKY 3.50E-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g1872 - - ahf:112797210 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g2146 14 119912586 119915353 Ahy4g1872 4 109322728 109325165 hybridization
Ahy4g1872 4 109322728 109325165 Ahy12g0613 12 9864706 9866432 PCT
Ahy4g1872 4 109322728 109325165 Ahy2g0514 2 7344190 7346061 PCT
Ahy12g0613 12 9864706 9866432 Ahy4g1872 4 109322728 109325165 PCT
Ahy2g0514 2 7344190 7346061 Ahy4g1872 4 109322728 109325165 PCT