Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g1848 ATGCAATTGCAACGGCGTGTTCTCGAAACAGGGTTAAGCATTTCACCATCTTCTTCATCGTCTTCTTCTTCTTCGATCATCAATGAAGCGAACTTCGACACCAACATGGTGATAATCCTGGCGGCGCTAATGTGCGCACTGGTGTGCGCCTTGGGTCTGAACTCCATAGCACGGTGTGCGCTCCGGTGCGGACGGAGGCTGACGGCGGAGCAAGAGGCGGAGAGGCTGGCGACGACGGGGCTCAAGAAGAGCCACCTGAGGAGGATTCCCGTGGCGGTGTACGGCTCCGGCGAGAATATTCCAGCGACGGAGTGCCCAATATGTTTGGGTGAGTTCGAGAGAGGGGATAAAGTTAGAATGCTTCCTCAGTGTAACCACGGGTTTCACGTGAAGTGTATTGACACGTGGCTCGTTTCGCATTCGTCTTGCCCTAATTGCCGACACTCCTTGCTTGAGAAGCCTAAGGTAAATAATAGTGGTTCTGCTTCTTCAGGTGGTGGTGACGGCGGCGGTGGTGGGGGAGGTGGGGGAGGCGGGGGAGGAAACATGGTGATCGTCCTCGACCGGGCAAGTTAA 576 0.5538 MQLQRRVLETGLSISPSSSSSSSSSIINEANFDTNMVIILAALMCALVCALGLNSIARCALRCGRRLTAEQEAERLATTGLKKSHLRRIPVAVYGSGENIPATECPICLGEFERGDKVRMLPQCNHGFHVKCIDTWLVSHSSCPNCRHSLLEKPKVNNSGSASSGGGDGGGGGGGGGGGGGNMVIVLDRAS* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g1848 191 PANTHER RING-H2 FINGER PROTEIN ATL74 4 161 - -
Ahy4g1848 191 MobiDBLite consensus disorder prediction 1 25 - -
Ahy4g1848 191 MobiDBLite consensus disorder prediction 157 181 - -
Ahy4g1848 191 SMART ring_2 105 146 IPR001841 -
Ahy4g1848 191 CDD RING-H2_PA-TM-RING 104 147 - -
Ahy4g1848 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 152 IPR013083 -
Ahy4g1848 191 SUPERFAMILY RING/U-box 91 156 - -
Ahy4g1848 191 Pfam Ring finger domain 104 147 IPR001841 -
Ahy4g1848 191 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Ahy4g1848 191 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 4 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g1848 Ahy-Chr4 108705729 108706962 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g1848 6 154 C3H Transcription Factor Family AT3G10910 55.556 3.23e-56 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g1848 - K19040 vvi:100243283 221.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g2120 14 119146235 119147853 Ahy4g1848 4 108705729 108706962 hybridization