LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy4g1746	ATGAGCGTTAATCTCTTTCTCTGTTTCTTCTCTTTCTCGTTCTTTTTCGTCTTTTTAATACAAACCGTTTTTTCTCTCTCCCCCGACGGCGTTGCACTTCTCACTCTAAAATCCGCCGTGGACCCCGCCGGCGCCGCTGCGCTTGCCAATTGGAACGACGGAGACGCCACTCCGTGCGGATGGTCCGGGGTCAGCTGTAGTAACATCTCCGGGGACCCTGATCCCCGCGTCGTCGGCGTCTCCCTCGCCGGAAGGGGCCTCCGCGGCTACCTCCCATCGGAGCTCGGCACACTTCTCTACCTCCGCCGCCTCAATCTCCACTCCAACGCCTTCCGCGGCTCCATCCCCTCCCAGCTCTTTAACGCCACCGCGCTCCGATCCCTCTACCTCCACTCCAACAACCTCTCCGGCGACCTCCCTCCCTCCCTCTTCTCCCTCCGCCGCCTCCAGAACCTCGACCTCTCCGATAACTCCCTCTCCGGCTCAATTCCAAACTCTCTCCGCAACTGCTCACAGATCCAGCGCCTTGTCCTCGCCAGGAACAGATTCTCCGGCAAGATTCCGGCGACACCGTGGCCGGAGCTCCGAGAAATCATTCAGCTCGACCTCTCCGCGAACCTCCTAGAAGGTCCAATCCCGGACCAGATCGGAGAGCTTCAATCCCTCACCGGAACCTTAAACCTCTCGTTCAATCACCTCTCCGGCAACGTTCCAGAATCTCTCGGGAAACTTCCGGTGACGGTTAGCTTCGATTTGCGAAACAACAATCTCTCCGGCGAGATTCCCCAAACAGGATCGTTTTCAAACCAAGGCCCCACGGCGTTCCTCAACAACCCTAACCTCTGCGGTTTCCCGCTTCAAAAACCGTGTTCCGGTTCGGCACAGAGCGAACCGGGATCAAGCCCTGGTTCAAAAAGGGAACGGTCCGGATCACGGTCTAATAAAGGGCTAAGCCCCGGTTTAATTGTTCTAATCTCAGTAGCTGATGCCGCTGGCGTTGCTCTAATTGGACTCATAATTGTTTACGTTTATTGGAAAAAGAAAGACGGTTGCAACGGGTGTAGTTGTACCGGTAAGGCCAAGTTTGGCGGTGGCGAAAACGGGAAAACGCGTTTTTTGTGCTGTTCTTTGCCATGCATGAACGTTGGGGTGCTGAAGAGTGATGATTCTGAATTGGAGGAAGGTGAGAAAGGGGAGCGCGGAAGAGGGGAAGGGGAACTGGTGGCGATTGATAAGGGATTTAACTTTGAGCTTGATGAGTTGTTGAGGGCTTCAGCTTATGTTCTTGGGAAGAGTGGGTTGGGGATAGTGTATAAGGTTGTGCTTGGGAATGGGGTTCCTGTGGCTGTGAGGAGGCTTGGGGAGGGTGGTGAACAGAGGTATAAGGAGTTTGCTGCTGAGGTTCAGGCTATTGGGAAGGTCAAGCACCCTAATGTTGTGAAGCTAAGGGCTTATTATTGGGCACCTGATGAGAAGCTCTTGATCAGTGATTTCATCTCTAATGGCAATTTGACCACCGCTCTTAGAGGGAGAAATGGTCAACCAACTATGAACCTTCCATGGTCAACCAGGCTGAGAATTGCCAAAGGAGCAGCCAGGGGTTTGGCCTATCTCCATGAATGCAGTCCTAGAAAATTTGTTCATGGTGACATCAAGCCCTCCAATATTCTCCTTGATGGGGACTTCCAACCCCGAATTTCTGATTTCGGCCTTAACCGGTTGATCAGCATCACTGGCAATAACCCCTCCAATGGTGGCTTTATGGGAGGAGCTCTTCCTTACTTTAAGCCATCACAAACAGAACATACCAACAACTACAAGGCCCCTGAGGCCAGAGTTCCAGGCAGCAGACCAACCCAGAAATGGGATGTATATTCATTTGGAGTCGTGTTGCTCGAATTGCTTACTGGGAAGTCCCCTGATTCTACTCCTGCCCCATCAACTTCTATGGAAGTTCCTGATATGGTGAGGTGGGTGAGGAAAGGGTTTGAACAAGAAAGTCCGCTATCCGAAATGGTTGATCCTCCTTTGCTTCAAGAAGTTCATGCCAAAAAGGAGGTACTGGCTGTGTTTCATGTAGCATTGTCATGCACTGAGGGAGACCCTGAAGTCAGGCCTAGAATGAAAACTGTGTCTGAGAATCTAGAAAAGATTGGATCATAG	2163	0.5206	MSVNLFLCFFSFSFFFVFLIQTVFSLSPDGVALLTLKSAVDPAGAAALANWNDGDATPCGWSGVSCSNISGDPDPRVVGVSLAGRGLRGYLPSELGTLLYLRRLNLHSNAFRGSIPSQLFNATALRSLYLHSNNLSGDLPPSLFSLRRLQNLDLSDNSLSGSIPNSLRNCSQIQRLVLARNRFSGKIPATPWPELREIIQLDLSANLLEGPIPDQIGELQSLTGTLNLSFNHLSGNVPESLGKLPVTVSFDLRNNNLSGEIPQTGSFSNQGPTAFLNNPNLCGFPLQKPCSGSAQSEPGSSPGSKRERSGSRSNKGLSPGLIVLISVADAAGVALIGLIIVYVYWKKKDGCNGCSCTGKAKFGGGENGKTRFLCCSLPCMNVGVLKSDDSELEEGEKGERGRGEGELVAIDKGFNFELDELLRASAYVLGKSGLGIVYKVVLGNGVPVAVRRLGEGGEQRYKEFAAEVQAIGKVKHPNVVKLRAYYWAPDEKLLISDFISNGNLTTALRGRNGQPTMNLPWSTRLRIAKGAARGLAYLHECSPRKFVHGDIKPSNILLDGDFQPRISDFGLNRLISITGNNPSNGGFMGGALPYFKPSQTEHTNNYKAPEARVPGSRPTQKWDVYSFGVVLLELLTGKSPDSTPAPSTSMEVPDMVRWVRKGFEQESPLSEMVDPPLLQEVHAKKEVLAVFHVALSCTEGDPEVRPRMKTVSENLEKIGS*	721

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy4g1746	720	Pfam	Protein kinase domain	428	646	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy4g1746	720	Pfam	Leucine rich repeat	124	183	IPR001611	GO:0005515
	Ahy4g1746	720	PANTHER	LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1	3	719	-	-
	Ahy4g1746	720	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	546	558	IPR008271	GO:0004672\|GO:0006468
	Ahy4g1746	720	ProSiteProfiles	Protein kinase domain profile.	423	718	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy4g1746	720	CDD	STKc_IRAK	429	718	-	-
	Ahy4g1746	720	SMART	serkin_6	427	718	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy4g1746	720	ProSiteProfiles	Leucine-rich repeat profile.	148	170	IPR001611	GO:0005515
	Ahy4g1746	720	MobiDBLite	consensus disorder prediction	289	314	-	-
	Ahy4g1746	720	PANTHER	RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1	3	719	-	-
	Ahy4g1746	720	Pfam	Leucine rich repeat N-terminal domain	27	67	IPR013210	-
	Ahy4g1746	720	SUPERFAMILY	Protein kinase-like (PK-like)	428	715	IPR011009	-
	Ahy4g1746	720	MobiDBLite	consensus disorder prediction	289	307	-	-
	Ahy4g1746	720	Gene3D	Transferase(Phosphotransferase) domain 1	499	720	-	-
	Ahy4g1746	720	Pfam	DNA binding protein S1FA	313	347	IPR006779	GO:0003677\|GO:0005634\|GO:0006355
	Ahy4g1746	720	Gene3D	Ribonuclease Inhibitor	192	292	IPR032675	-
	Ahy4g1746	720	Gene3D	Ribonuclease Inhibitor	28	191	IPR032675	-
	Ahy4g1746	720	SUPERFAMILY	L domain-like	29	287	-	-
	Ahy4g1746	720	Gene3D	Phosphorylase Kinase; domain 1	408	498	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy4g1746	Ahy-Chr4	102969413	102974868	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy4g1746	24	718	Receptor kinase-like Gene Family	AT1G67510	69.437	0.0	972

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-III	Ahy4g1746		Pkinase	2.30E-32	CL0016
	TF	S1Fa-like	Ahy4g1746		Pkinase	2.30E-32	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy4g1746	-		-	gmx:100795021	1116.68

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy14g1985	14	112688889	112694272	Ahy4g1746	4	102969413	102974868	hybridization
	Ahy4g1746	4	102969413	102974868	Ahy12g2117	12	106311794	106316505	PCT
	Ahy4g1746	4	102969413	102974868	Ahy2g1848	2	91746823	91751329	PCT