Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g1674 ATGGGTTATTCTGAAACCAATCAGCATGACGAAGAAGCATCCAAGATTCCAGCGTTGCCAACTGATGCACCTAATGATGATGTGAAATTGAGGTCTAGGGACCAAAGAGAGGCTCTCCTGGGTGAGCCAAAGTGTATCATATGTGGCCGTTATGGTGAGTATATCTGTGATGAAACTGACGATGATGTTTGCAGTTTGGAATGCAAACAATTACTACTAGGCAGAATCGCCAAATCCTTGCCTCCTGTTGGAGGAGTTCTTCAGCCGCCTAAAAAACTACCTGCAGCTGACGAGTGCTTTTATGTTAGAGAGAATGATTGTGAATCAGGAACTTTATCTTTAGCTAGAGATCAGGTTGAATTGCTTAGAAAGAAGCTTGAAATTCATGTGAAGGGTGATGTAGTGGCGCCGGTTTTGTCATTTGCTTCATGCAGTCTCCCTGACAAGCTCCTCCACAATGTAGAAGCAGCGGGGTATGAAATGCCTACCCCTGTTCAGATGCAAGCAATCCCTGCCGCTTTGACGGGAAATAGCACGCTTGTTCTGGCTGAAACAGGATCTGGAAAGTCTGCTTCGTTTCTTATTCCAATAATTTCTCGATGTGCAAGTCATCGCCTTGTATTTACTCCAGATAAGAAGCCTTTAGCGATGGTGTTAACACCTACTAGAGAGCTTTCTATACAGGTTGAAGAGCATGCAAAGTTGCTCGGAAAGGGGTTACCATTTAAAACTGCCCTTGTGGTTGGTGGCGAGGCCATGGCTAGACAACTCTATCGCTTTCAGCAAGGAGTTGAACTGATTGTGGGAACACCAGGAAGGCTTGTCGATCTTTTAACAAAGCATGAGATCGACTTAGATAACGTGATGACTTTAGTTTTGGATGAAGTTGATTGCATGCTTCAAAGGGGTTTCAGAGATCAGGTCATACAGATATACAGGGCTCTGTCACAACCTCAGGTCTTGATGTATTCTGCAACAATGTCTCATGATTTAGAGAAGATGGCAAACTCTCTTGCGAATGGTGTGTCGGTTATCTCTGTTGGGAAGGTGAATAGCCCAAATAAGGCTGTGAAGCAGGTCGCTATTTGGGTTGAGTCAAAGCAAAAGAAGCAGAAGCTGTTTGACATATTACTGAGTAGGCAACATTTTAAGCCACCGGCTGTAGTGTATGTGGACTCCCGACTTGGAGCAGATCTTCTGGCAAATGCAATAAAAGTTGCCACAGGAATTTCAGCTAATTCAATTCATGGAGAGAAGTCCATGAAGGAAAGGAGAGAAATAATGCAGTCACTTTTGGTTGGTGAGGTTCCGGTGGTTGTGGCTACTGGAGTTTTGGGTAGGGGAGTTGACCTATTGGGTGTGAGGCAGGTAATTGTGTTTGACATGCCAAATTCTATTAAGGAGTACATACATCAGATTGGAAGGGCATCTAGGATGGGAGGGGAAGGTGAAGCCATAGTTTTTGTGAATGAGGAGAGCAAGAATGTCTTTCCAGATTTAGTTGATGTATTAAAATCTGGTGGAGCAGCTGTTCCCCGGGAGCTTGCCAATTCACGGTATACCACTGGATTTTTTCCTGGTGGCAAGGGTTCAAAAAAGCGAAAGCATAGATAA 1614 0.4424 MGYSETNQHDEEASKIPALPTDAPNDDVKLRSRDQREALLGEPKCIICGRYGEYICDETDDDVCSLECKQLLLGRIAKSLPPVGGVLQPPKKLPAADECFYVRENDCESGTLSLARDQVELLRKKLEIHVKGDVVAPVLSFASCSLPDKLLHNVEAAGYEMPTPVQMQAIPAALTGNSTLVLAETGSGKSASFLIPIISRCASHRLVFTPDKKPLAMVLTPTRELSIQVEEHAKLLGKGLPFKTALVVGGEAMARQLYRFQQGVELIVGTPGRLVDLLTKHEIDLDNVMTLVLDEVDCMLQRGFRDQVIQIYRALSQPQVLMYSATMSHDLEKMANSLANGVSVISVGKVNSPNKAVKQVAIWVESKQKKQKLFDILLSRQHFKPPAVVYVDSRLGADLLANAIKVATGISANSIHGEKSMKERREIMQSLLVGEVPVVVATGVLGRGVDLLGVRQVIVFDMPNSIKEYIHQIGRASRMGGEGEAIVFVNEESKNVFPDLVDVLKSGGAAVPRELANSRYTTGFFPGGKGSKKRKHR* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g1674 537 Pfam HIT zinc finger 43 69 IPR007529 -
Ahy4g1674 537 Pfam Helicase conserved C-terminal domain 371 480 IPR001650 -
Ahy4g1674 537 Gene3D - 107 346 IPR027417 -
Ahy4g1674 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 285 493 IPR027417 -
Ahy4g1674 537 Gene3D - 25 80 - -
Ahy4g1674 537 MobiDBLite consensus disorder prediction 1 28 - -
Ahy4g1674 537 PANTHER ATP-DEPENDENT RNA HELICASE DDX59-RELATED 25 520 - -
Ahy4g1674 537 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 25 520 - -
Ahy4g1674 537 CDD SF2_C_DEAD 357 489 - -
Ahy4g1674 537 Pfam DEAD/DEAH box helicase 163 333 IPR011545 GO:0003676|GO:0005524
Ahy4g1674 537 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 139 167 IPR014014 GO:0003724
Ahy4g1674 537 SMART helicmild6 398 480 IPR001650 -
Ahy4g1674 537 SMART ultradead3 158 360 IPR014001 -
Ahy4g1674 537 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 170 345 IPR014001 -
Ahy4g1674 537 Gene3D - 347 521 IPR027417 -
Ahy4g1674 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 346 IPR027417 -
Ahy4g1674 537 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 356 519 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g1674 Ahy-Chr4 99452081 99455758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g1674 133 517 Eukaryotic Initiation Factors Gene Family AT3G19760 29.231 1.66e-56 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g1674 K19466 - gmx:100781473 806.979