Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g1650 ATGGGGTTTAGTTTCAAGAGAAGGAAGAAGGAGCAAGATGGAGGGGGTGGAGATATCACTAGGTCTTTCAAGGATTCACTTAAAGCTCTTGAAGCTGACATCCAATTTGCCAATACACTAGCTTCTGGGTATCCATGCGAGCACGATGGTTCTCGCTTCCAAATGAGGTTATCATACAGCCCAGCTGCTCAATTTTTCCTTTTTATGGTTCAATGGACCGATTGTCACCTTGCCGGAGCACTGGGATTGCTTAGAATTCTTATATACAAGGCATGTGCTGATGGTAAGACAACCATTTCGATTTATGAACGAAAAGCGAGCCTGAAGGAGTTCTACCGTGTGCTGTTTCCCTCTTTGTTGCAACTCAACGGAGGAATCAGTGATGTTGAAGACAGGAAACAAAAACATTTGTGTGCTACTAAGTATAAGACAAGAGACATGACAAGCAAGGGAAAGGTCTCTGAAATCGAGATAGAGAGAGAAGAAGAATGTGGCATTTGCCTGGAGATGAATGGCACGGTTGTGTTGCCGAATTGCAATCACTCGATGTGTATGAAATGCTACGAAGATTGGTGGGGAAGATCTCAATCTTGCCCTTTCTGTAGAGAAAGTCTTGAAGGAGTAAAGTCTGGTGACCTTTGGATCTACATAAACAAGAGTGAAATTGATGATTTGGCTTCAATCACCAAAGAGAATTTGAAGAGATTATTTATGTACATACAAAGATTGCCCATCATTGTGCCAGACCCCCCTATATCGGTTTCATACCATCATCGCTGGTGA 783 0.4266 MGFSFKRRKKEQDGGGGDITRSFKDSLKALEADIQFANTLASGYPCEHDGSRFQMRLSYSPAAQFFLFMVQWTDCHLAGALGLLRILIYKACADGKTTISIYERKASLKEFYRVLFPSLLQLNGGISDVEDRKQKHLCATKYKTRDMTSKGKVSEIEIEREEECGICLEMNGTVVLPNCNHSMCMKCYEDWWGRSQSCPFCRESLEGVKSGDLWIYINKSEIDDLASITKENLKRLFMYIQRLPIIVPDPPISVSYHHRW* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g1650 260 SMART ring_2 164 201 IPR001841 -
Ahy4g1650 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 211 IPR013083 -
Ahy4g1650 260 PANTHER RING FINGER PROTEIN 41, 151 11 247 - -
Ahy4g1650 260 MobiDBLite consensus disorder prediction 1 20 - -
Ahy4g1650 260 ProSitePatterns Zinc finger RING-type signature. 179 188 IPR017907 -
Ahy4g1650 260 SUPERFAMILY RING/U-box 153 205 - -
Ahy4g1650 260 ProSiteProfiles Zinc finger RING-type profile. 164 202 IPR001841 -
Ahy4g1650 260 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 11 247 - -
Ahy4g1650 260 Pfam Zinc finger, C3HC4 type (RING finger) 161 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g1650 Ahy-Chr4 97743989 97747667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g1650 108 213 C3H Transcription Factor Family AT5G01960 31.532 5.15e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g1650 K25840 - gmx:100814293 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g1860 14 105876188 105879955 Ahy4g1650 4 97743989 97747667 hybridization