Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g1646 ATGGGATCAAGCAGCTTTCTGTGGAATTTTACCAAAAAGTTTGTCACATTTGGGATCATTACTGTTACTGTATCTGATCGTTATGTAACAGTGGTTCCAGTTCGGGGTGGCTCTATGTCTCCCACACTTAATCCAAAAACCAGCTCTTCTGCAGGAAACTTCTCTGATGATTATGTCTTGGTTGAGAAGTTTTGCGTTGACAAATACAGATTTTCACATGGAGATGTTGTGGTCTTCAGCTCTCCATTGAATCACAAGGAGAGACACATAAAGAGAATAGTTGCATTATCTGGTGAATGGTTTGGTAGTCGTCAGAACTATGATGTGTTGAAGGTTCCAGAAGGACATTGTTGGGTTGAGGGAGATAATGCGGCTTTTAGCATGGATTCAAAGTCATTTGGACCTATTCCCTTGGGCCTCATACGAGGAAGGGTGACCCATGTTGTGTGGCCTCCACAAAGAATAGGCGCCATCCAGAGTCCTCCACGAGAAAGATTATCTTCTTTATAG 510 0.4275 MGSSSFLWNFTKKFVTFGIITVTVSDRYVTVVPVRGGSMSPTLNPKTSSSAGNFSDDYVLVEKFCVDKYRFSHGDVVVFSSPLNHKERHIKRIVALSGEWFGSRQNYDVLKVPEGHCWVEGDNAAFSMDSKSFGPIPLGLIRGRVTHVVWPPQRIGAIQSPPRERLSSL* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g1646 169 CDD S26_SPase_I 31 145 IPR019533 GO:0004252|GO:0006465
Ahy4g1646 169 Pfam Signal peptidase, peptidase S26 105 150 IPR019533 GO:0004252|GO:0006465
Ahy4g1646 169 Pfam Signal peptidase, peptidase S26 8 99 IPR019533 GO:0004252|GO:0006465
Ahy4g1646 169 PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 1 160 IPR037730 GO:0006465|GO:0006627|GO:0008236|GO:0042720
Ahy4g1646 169 Gene3D Umud Fragment, subunit A 26 161 - -
Ahy4g1646 169 SUPERFAMILY LexA/Signal peptidase 29 158 IPR036286 -
Ahy4g1646 169 PRINTS Bacterial leader peptidase 1 (S26A) family signature 27 43 IPR000223 GO:0006508|GO:0008236|GO:0016020
Ahy4g1646 169 PRINTS Bacterial leader peptidase 1 (S26A) family signature 89 101 IPR000223 GO:0006508|GO:0008236|GO:0016020
Ahy4g1646 169 PRINTS Bacterial leader peptidase 1 (S26A) family signature 112 131 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g1646 Ahy-Chr4 97624954 97631376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g1646 39 162 MADS-box Gene Family AT1G29960 36.154 1.17e-18 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g1646 K09648 - gmx:100527429 271.166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g1857 14 105778209 105782969 Ahy4g1646 4 97624954 97631376 hybridization