Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g1618 ATGTTGCCATTCTTCCCAAGGCTTAATCCCATGAAGCTCTTAGCAATGTGTTGCCTTCTTTTAATGAGTGTTACAACTTCCATGACTACCACTTCAGTTGCTATTCAAGGCAACGAAGAAGCGTATGCTTTGCTGGACTGGAAAGCCAGCTTTGAGAAGCAAAGCCAGGCTTTGCTCTCTTCTTGGAATGGTAGCGACCCCTGCCATTGGGTGGGAATAGCATGTGACCACTCCAAATCTGTGTCCTCGCTAAACTTTACCAACTTTGGCCTAAGAGGTACGCTTCAAACTCTCAATTTCTCGTCACTTCCCAGCATCCATACAATAGTCATGAGGAACAACTCTTTTTATGGAACCATTCCCAAACAAATTGGTGCATTATCCAATCTGGACACTCTTGATGTCCACTCCAATCAGTTCTCTGGTTTCATTCCCAAACAAATTGGTAGTTTGTCTAAACTCACCGTTCTTGATTTGGGTGCCAACAATTTCTTGGGCAACATTCCCCAAGAAACTAAGCATTTGAGCAACTTGAAGTATTTGTCATTTGCATACAATAATAATTTAAGGGGATCCATTCCTGCCGAGATTGGGATGTTGAGGAATCTAACACAGCTGCATTTTGAACATTGCAATCTCACAGGTTCTATCCCTACTACAATAGGCAACTTAACTAATTTGTCTGTACTCAATTTGAATATCAACCATTTAGATGGTCCCATTCCTCGAGAAATAGGCAAGTTAGTTAATGTGAAGTTTCTATGGCTTCAAACCAATGAACTTTCTGGTTCCATCCCTCGAGAAATTGGTCTCATGACAAATCTCTATCAGCTTGATTTTTCTGACAATAATCTCTCTGGTTGTATTCCTTCTACAATTGGAAATTTAAGCAATTTGGTATATCTATACCTTTATATCAATTCTCTCTCTGGTGCGATTCCTGATGAAATTGGAAACCTTTATTCTCTTTCTACGATCCAATTGTCATCCAATAACCTTTCAGGGACAATTCCACCTTCCACAAGTAGCTTGGTCAATTTAAACTCTATTCTTCTTAGTGGGAATATGCTCTCAGGTCCAGTTTCATTGTCCATTGGGAATTTAGTCAAGTTAGAGATGCTCAACCTTGATAAAAATAATCTTTCTGGGCCAATCCCTTCCACTATCGGAAAATTGGTAAATTTGGTTCAACTTGACCTTTATCAAAATAATCTTTCTGGGCCAATCCCTTCCACTATCGGAAAATTGGTAAATTTGGTTCAACTTGACCTTGGTGATAATAATTTTTCTGGGCCAATCCCTTCCACTATCGGAAAATTAGCAAATTTGGTTCGACTTGGCCTTGATGAAAATATACTCTCTGGAACAATCCCTTCCTCCATTGGAAACTTGACAAAACTGTTGGAACTAGTGTTATTGTCGAATGAACTTAGTGGTGAAATTCCAATAGAGTATAACAAGCTCACAGAATTGGAAAATCTCCAATTGAGTAATAATCATTTCAATTGGCAGTTGCCTCACAACATCTGTACAAGTGGAAATTTGGCTAAACTTTCAGCCGCAAATAACTACTTCACAGGTGTAGTTCCAAGTAGCTTAAAGAATTGCTCCAGCCTTGTAAGATTAAGGCTTGACGGAAACCAGATAACCGGAAATATAACTGAATCTTTTGGTGTATATCCAAATTTGGTCTACATTGATTTGAGTGACAATAATTTTCATGGCCATCTTTCATCAAAGTGGGGGAAATGTTCCAACCTGACGTGCCTCAAGATCTCCAACAATAATCTGTCGGGTCATATACCAACGGAACTAAGTGAAGCAACCAACTTGCAAGAACTTGACTTGTCTTCAAATCATCTTACGGGAGCAATTCCAAAAGAGCTTGGAAAGTTGACTTTGCTGATACAACTCTTGTTAAGCAACAACAGTTTTTCCGGAAATGTTCCCATTCAGATTTCATCATTGCAACAACTTGAAACGTTGGATCTTGCCAGGAACAATTTCAGAGGCCTCATCACAAAAGAACTTAGCATGTTGCCTAAGTTGTCCAACTTGAGTCTGAGCCAAAACGAATTTAATGGAACTATTCCTCTCGAGCTTGGGAATCTAAGATCCCTTCATGACTTTGATCTTGGTGACAATCTTTTAGATGGAAGCATTCCAGCATCACTTGGCCACTTGATGTTCTTAGAAAATTTGAACCTCTCTCATAACAATCTTTCTGGTGTCATTCCCTCAAGTTTTGATGGGATGTTAAGTTTGACAACTGTGGATATATCATATAACCAATTAGAAGGCCCACTTCCAAATATTCCAGCCTTCATAAAAGCTCCATTTGAAGCATTGAGAGATAATAAAGGTTTGTGTGGTAATGTCACTGGTATTGAGCCTTGTCCAGCGTCATCAACTGGTGATTCTCATAATGACCATAAAGCTAAGAAAGTTGTTGTGCTCATATTGGTCCTTTCTTTGGCCATCATAATAGCACTCTTAGTATTATGGGTATCATGCCGTGTATACCAAGGAACAGGCCGAAAGGAAAGCAATGCTACAGAGACGCAAACTCAAAATTTATTTGCAATTTGGAGCTATGATGGCAAGATGGTGTATGAAGAGATTATTGAGGCCACAGAAGATTTTGACAACAAATATCTCATTGGAGTTGGAGGCTTTGGATCTGTCTACCGAGCTGAGTTGTCCACCGGTCAAGTTGTTGCCGTGAAAAAACTTCATTCAATACCAAATGAAGAAGTTCCCAATCTCAAAACTTTCCAGAGTGAGATTCAAGCCTTGACAGAAATCCGTCATCGCAACATTGTGAAGCTATATGGATTCTGTTCTCATTCTCGGCACTCCTTTTTGGTTTATGAGATTATAGAAAGAGGTAGCATTGACAAGATTCTAGCGAATGATGAAGAAGCGGTTGAGTTTGATTGGAATAGGAGGGTGAATGCTGTTAAAGGAGTAGCTAATGCTTTATGCTACATGCACCATGATTGTTCACCTCCTATAGTGCATAGAGATATATCAGCAAAAAATGTTCTTCTGGATTTGGAACATGAGGCTCATGTGTCAGATTTTGGAGCATCTAAACTTCTTAATCCAAATTCATCAAATTGGACCTCTTTTGCAGGGACCTTTGGTTATGCAGCTCCAGAACTTGCTTACACTATGGAGGTGAATGAAAAATGTGATGTGTATAGCTTCGGGATATTAGCTTTGGAAATAATGTTGGGGAAGCATCCTGGAGATGCTGCATCATCATCTATGGTGATGATACCATCTTCAGAGACAATGGAATATGCATCAACACTTGATAATAAGTTTTTCTTAAAGGATAAGTTGGATCATCGTCTTCCTTACCCTACAAATCCAATTGCAGTAGAGATTATGCAAATTGTGAAGATAGCAAGTGCCTGTTTGACAGAAAATCCACGTTCTCGTCCTACCATGGAACAAGTGGTGAAAGATCTTGTGGTGGCAAACGCTTCAGTTTCAACAATGCATTAA 3513 0.3934 MLPFFPRLNPMKLLAMCCLLLMSVTTSMTTTSVAIQGNEEAYALLDWKASFEKQSQALLSSWNGSDPCHWVGIACDHSKSVSSLNFTNFGLRGTLQTLNFSSLPSIHTIVMRNNSFYGTIPKQIGALSNLDTLDVHSNQFSGFIPKQIGSLSKLTVLDLGANNFLGNIPQETKHLSNLKYLSFAYNNNLRGSIPAEIGMLRNLTQLHFEHCNLTGSIPTTIGNLTNLSVLNLNINHLDGPIPREIGKLVNVKFLWLQTNELSGSIPREIGLMTNLYQLDFSDNNLSGCIPSTIGNLSNLVYLYLYINSLSGAIPDEIGNLYSLSTIQLSSNNLSGTIPPSTSSLVNLNSILLSGNMLSGPVSLSIGNLVKLEMLNLDKNNLSGPIPSTIGKLVNLVQLDLYQNNLSGPIPSTIGKLVNLVQLDLGDNNFSGPIPSTIGKLANLVRLGLDENILSGTIPSSIGNLTKLLELVLLSNELSGEIPIEYNKLTELENLQLSNNHFNWQLPHNICTSGNLAKLSAANNYFTGVVPSSLKNCSSLVRLRLDGNQITGNITESFGVYPNLVYIDLSDNNFHGHLSSKWGKCSNLTCLKISNNNLSGHIPTELSEATNLQELDLSSNHLTGAIPKELGKLTLLIQLLLSNNSFSGNVPIQISSLQQLETLDLARNNFRGLITKELSMLPKLSNLSLSQNEFNGTIPLELGNLRSLHDFDLGDNLLDGSIPASLGHLMFLENLNLSHNNLSGVIPSSFDGMLSLTTVDISYNQLEGPLPNIPAFIKAPFEALRDNKGLCGNVTGIEPCPASSTGDSHNDHKAKKVVVLILVLSLAIIIALLVLWVSCRVYQGTGRKESNATETQTQNLFAIWSYDGKMVYEEIIEATEDFDNKYLIGVGGFGSVYRAELSTGQVVAVKKLHSIPNEEVPNLKTFQSEIQALTEIRHRNIVKLYGFCSHSRHSFLVYEIIERGSIDKILANDEEAVEFDWNRRVNAVKGVANALCYMHHDCSPPIVHRDISAKNVLLDLEHEAHVSDFGASKLLNPNSSNWTSFAGTFGYAAPELAYTMEVNEKCDVYSFGILALEIMLGKHPGDAASSSMVMIPSSETMEYASTLDNKFFLKDKLDHRLPYPTNPIAVEIMQIVKIASACLTENPRSRPTMEQVVKDLVVANASVSTMH* 1171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g1618 1170 Gene3D Ribonuclease Inhibitor 289 384 IPR032675 -
Ahy4g1618 1170 Gene3D Ribonuclease Inhibitor 385 486 IPR032675 -
Ahy4g1618 1170 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 299 398 - -
Ahy4g1618 1170 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 17 180 - -
Ahy4g1618 1170 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 180 338 - -
Ahy4g1618 1170 Gene3D Ribonuclease Inhibitor 187 288 IPR032675 -
Ahy4g1618 1170 Gene3D Phosphorylase Kinase; domain 1 841 958 - -
Ahy4g1618 1170 Gene3D Ribonuclease Inhibitor 487 801 IPR032675 -
Ahy4g1618 1170 Pfam Protein kinase domain 883 1158 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy4g1618 1170 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
Ahy4g1618 1170 ProSiteProfiles Protein kinase domain profile. 881 1170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy4g1618 1170 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 349 1165 - -
Ahy4g1618 1170 Gene3D Ribonuclease Inhibitor 37 186 IPR032675 -
Ahy4g1618 1170 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 17 180 - -
Ahy4g1618 1170 Pfam Leucine rich repeat 561 621 IPR001611 GO:0005515
Ahy4g1618 1170 Pfam Leucine rich repeat 705 765 IPR001611 GO:0005515
Ahy4g1618 1170 Pfam Leucine rich repeat 370 429 IPR001611 GO:0005515
Ahy4g1618 1170 SMART LRR_typ_2 656 679 IPR003591 -
Ahy4g1618 1170 SMART LRR_typ_2 488 512 IPR003591 -
Ahy4g1618 1170 SMART LRR_typ_2 272 296 IPR003591 -
Ahy4g1618 1170 SMART LRR_typ_2 728 751 IPR003591 -
Ahy4g1618 1170 SMART LRR_typ_2 416 440 IPR003591 -
Ahy4g1618 1170 SMART LRR_typ_2 368 392 IPR003591 -
Ahy4g1618 1170 SMART LRR_typ_2 320 344 IPR003591 -
Ahy4g1618 1170 SMART LRR_typ_2 680 704 IPR003591 -
Ahy4g1618 1170 SMART LRR_typ_2 609 632 IPR003591 -
Ahy4g1618 1170 SMART LRR_typ_2 127 151 IPR003591 -
Ahy4g1618 1170 SMART LRR_typ_2 224 248 IPR003591 -
Ahy4g1618 1170 SUPERFAMILY L domain-like 379 482 - -
Ahy4g1618 1170 Gene3D Transferase(Phosphotransferase) domain 1 960 1168 - -
Ahy4g1618 1170 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 299 398 - -
Ahy4g1618 1170 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 180 338 - -
Ahy4g1618 1170 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1005 1017 IPR008266 GO:0004672|GO:0006468
Ahy4g1618 1170 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 349 1165 - -
Ahy4g1618 1170 ProSitePatterns Protein kinases ATP-binding region signature. 887 910 IPR017441 GO:0005524
Ahy4g1618 1170 SUPERFAMILY L domain-like 69 385 - -
Ahy4g1618 1170 SUPERFAMILY Protein kinase-like (PK-like) 861 1161 IPR011009 -
Ahy4g1618 1170 SUPERFAMILY RNI-like 457 767 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g1618 Ahy-Chr4 94316876 94320766 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g1618 19 650 Receptor kinase-like Gene Family AT4G08850 37.147 1.27e-108 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ahy4g1618 Pkinase 3.80E-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g1618 - - mtr:MTR_1g040615 1218.37