Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g1551 ATGTTGAATCGTCGTGGTGGTGAAGAAGATGAGTTATATGAACAACTATGGGAAGCATGTGCAGGACCCCATGTGGATGTTCCTCGTTCTGGTCAAAGAGTGTTCTATTTTCCACAGGGACATATGGAGCAAGCTGAACAAGAAACGGATGAGGTTTATGCACAGATTACTTTGGTGCCAGAATCTAATCAAGCTGAGCCGACGAGCCCTGATTTGTGCCCCGCCGAGCTTCCAAGGCCACAAAATCACTCCTTTTGCAAGGTCTTAACTGCCTCCGATACCAGCACTCATGGCGGTTTCTCGGTTCTCAGAAAGCATGCCACCGAATGCCTTCCAGCTTTGGACATGTCTCAGCCAACCCCAACTCAGGAACTGGTCGCCAAGGATCTTCATGGTTACGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCACGCAGGCACTTGATCACAACTGGATGGAGTACTTTTGTAGCTTCGAAGAGATTAGTCGCCGGAGACACCTTTGTGTTTCTGAGAGGACACAACGGAGAGTTACGTGTTGGACTGAGGCGTAATACTCCTCAGCCGAGCAGCATGCCTTCATCTGTGATTTCCAGTCAGAGCATGCATCTTGGAGTACTCGCAACTGCATCTCATGCTGTTGCAACTCAAACTCTTTTTGTTGTATATTACAAGCCAAGGAGGTGCCAGTTCATTGTTGGCTTGAACAAGTATTTAGAGGCTATGAACCACAAGTTTGCTGTTGCTATGAGATTCAAGATGAGGTTCGAGGGTGAAGATACCCCTGAAAATGAGAGAAGATTTTCTGGGACAATAGTTGGAGTAGAGGATATTTCTCCTTATTGGGTAAATTCGAATTGGAGATCGCTTAAGGTTCTATGGGATGAACCTGCATCTGTTCCAAGACCTGATAGGGTCTCACCTTGGGAAATAGAGCCCCTTATGGCTTCTGTTGTTACTTCTTCACTTCAATCTCCTGTTTTAAAGAATAAAAGGCCTCGGCTACCTGGTGAAGTTCATGAACTTGACACAAGATCGGCTGCTTCGACTTTCTGGGATGCTGCGTTGGCACATTCAGATGTAACGCAACTTAGCGTTATTGCTGAAAGCAATATGAGTGATGGTACCCATGTGTGGAATCACAAGCTGATTGACAACAGTAAAGGAAGCTACAATGCTATGTTGAGGATTCAGACCGAAGCAATTCGGGTTTCTTCTCCCCATTCAAGTGGCCCATCTCAATTATTTCAGGACACAACATTTGATGATGGCAAGAGGTTAAACAACAATGATCATTTGCTTGATCAAGTAGACAAGGAGCACAAAATGGAGACGGCTACGAGCTGTCGATTGTTTGGAATCGAGCTTATTGATCATGCCAAGAACTCTCCTGCTGTAGAGAAGGCATCATCCATAGCGAATGCATCCGGAGTTACCAATGAGGGCTCTGTTAATACCATGTCCCGAACTGATGCAGACCAAAACTCTGATATAGTTAAGACTTCGAACAAAGAGCGAAAGCACGAAGAGCCGCAACAAGTATCCAAAAGAGAAACTCAAAGCAAGCAAATCTGTAGCAGAAGTTGCACTAAGGTTCAAATGCAGGGGGTTGCTGTGGGGCGCGCCATAGACTTGACCATGTTGGAAGGGTATGATCAACTTGTTGAAGAACTGGAGAAGTTGTTTGATATAAAGGGAGAGCTCCAACACAGAAATACGTGGCAAATTGTCTTCACTGATGACGAAGGTGATATGATGCTTGTTGGCGATGATCCATGGCCTGAATTCTGCAATATGGTGAGAAGAATCTTCATCTGTTCCAGCCAGGACGTGAAGAAAATGAGCTCTGTGAGGACCAAACTACCCCTCTCTTTAACAGAAGAGGAAACTGTAATAAGCTCAGACACAGCTGGGACCTGA 1923 0.454 MLNRRGGEEDELYEQLWEACAGPHVDVPRSGQRVFYFPQGHMEQAEQETDEVYAQITLVPESNQAEPTSPDLCPAELPRPQNHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLITTGWSTFVASKRLVAGDTFVFLRGHNGELRVGLRRNTPQPSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRRCQFIVGLNKYLEAMNHKFAVAMRFKMRFEGEDTPENERRFSGTIVGVEDISPYWVNSNWRSLKVLWDEPASVPRPDRVSPWEIEPLMASVVTSSLQSPVLKNKRPRLPGEVHELDTRSAASTFWDAALAHSDVTQLSVIAESNMSDGTHVWNHKLIDNSKGSYNAMLRIQTEAIRVSSPHSSGPSQLFQDTTFDDGKRLNNNDHLLDQVDKEHKMETATSCRLFGIELIDHAKNSPAVEKASSIANASGVTNEGSVNTMSRTDADQNSDIVKTSNKERKHEEPQQVSKRETQSKQICSRSCTKVQMQGVAVGRAIDLTMLEGYDQLVEELEKLFDIKGELQHRNTWQIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVKKMSSVRTKLPLSLTEEETVISSDTAGT* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g1551 640 Pfam Auxin response factor 211 292 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ahy4g1551 640 Pfam AUX/IAA family 505 612 IPR033389 -
Ahy4g1551 640 PANTHER AUXIN RESPONSE FACTOR 45 624 - -
Ahy4g1551 640 Gene3D - 82 187 IPR015300 -
Ahy4g1551 640 ProSiteProfiles B3 DNA-binding domain profile. 85 187 IPR003340 GO:0003677
Ahy4g1551 640 CDD B3_DNA 83 185 IPR003340 GO:0003677
Ahy4g1551 640 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 45 624 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ahy4g1551 640 SMART B3_2 85 187 IPR003340 GO:0003677
Ahy4g1551 640 Pfam B3 DNA binding domain 85 186 IPR003340 GO:0003677
Ahy4g1551 640 Gene3D - 524 616 - -
Ahy4g1551 640 Gene3D - 246 320 - -
Ahy4g1551 640 ProSiteProfiles PB1 domain profile. 528 609 IPR000270 GO:0005515
Ahy4g1551 640 SUPERFAMILY DNA-binding pseudobarrel domain 77 214 IPR015300 -
Ahy4g1551 640 MobiDBLite consensus disorder prediction 478 522 - -
Ahy4g1551 640 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 46 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ahy4g1551 640 MobiDBLite consensus disorder prediction 499 517 - -
Ahy4g1551 640 SUPERFAMILY CAD & PB1 domains 531 604 - -
Ahy4g1551 640 PANTHER AUXIN RESPONSE FACTOR 6 46 - -
Ahy4g1551 640 MobiDBLite consensus disorder prediction 478 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g1551 Ahy-Chr4 86972661 86977597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g1551 2 616 B3 DNA Binding Superfamily AT4G23980 54.893 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ahy4g1551 AUX_IAA 6.30E-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g1551 K14486 - gmx:100779003 909.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g1753 14 98830670 98835204 Ahy4g1551 4 86972661 86977597 hybridization
Ahy4g1551 4 86972661 86977597 Ahy12g1798 12 96760442 96765693 PCT
Ahy4g1551 4 86972661 86977597 Ahy2g1545 2 82821531 82827123 PCT
Ahy12g1798 12 96760442 96765693 Ahy4g1551 4 86972661 86977597 PCT
Ahy2g1545 2 82821531 82827123 Ahy4g1551 4 86972661 86977597 PCT