LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy4g1551	ATGTTGAATCGTCGTGGTGGTGAAGAAGATGAGTTATATGAACAACTATGGGAAGCATGTGCAGGACCCCATGTGGATGTTCCTCGTTCTGGTCAAAGAGTGTTCTATTTTCCACAGGGACATATGGAGCAAGCTGAACAAGAAACGGATGAGGTTTATGCACAGATTACTTTGGTGCCAGAATCTAATCAAGCTGAGCCGACGAGCCCTGATTTGTGCCCCGCCGAGCTTCCAAGGCCACAAAATCACTCCTTTTGCAAGGTCTTAACTGCCTCCGATACCAGCACTCATGGCGGTTTCTCGGTTCTCAGAAAGCATGCCACCGAATGCCTTCCAGCTTTGGACATGTCTCAGCCAACCCCAACTCAGGAACTGGTCGCCAAGGATCTTCATGGTTACGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCACGCAGGCACTTGATCACAACTGGATGGAGTACTTTTGTAGCTTCGAAGAGATTAGTCGCCGGAGACACCTTTGTGTTTCTGAGAGGACACAACGGAGAGTTACGTGTTGGACTGAGGCGTAATACTCCTCAGCCGAGCAGCATGCCTTCATCTGTGATTTCCAGTCAGAGCATGCATCTTGGAGTACTCGCAACTGCATCTCATGCTGTTGCAACTCAAACTCTTTTTGTTGTATATTACAAGCCAAGGAGGTGCCAGTTCATTGTTGGCTTGAACAAGTATTTAGAGGCTATGAACCACAAGTTTGCTGTTGCTATGAGATTCAAGATGAGGTTCGAGGGTGAAGATACCCCTGAAAATGAGAGAAGATTTTCTGGGACAATAGTTGGAGTAGAGGATATTTCTCCTTATTGGGTAAATTCGAATTGGAGATCGCTTAAGGTTCTATGGGATGAACCTGCATCTGTTCCAAGACCTGATAGGGTCTCACCTTGGGAAATAGAGCCCCTTATGGCTTCTGTTGTTACTTCTTCACTTCAATCTCCTGTTTTAAAGAATAAAAGGCCTCGGCTACCTGGTGAAGTTCATGAACTTGACACAAGATCGGCTGCTTCGACTTTCTGGGATGCTGCGTTGGCACATTCAGATGTAACGCAACTTAGCGTTATTGCTGAAAGCAATATGAGTGATGGTACCCATGTGTGGAATCACAAGCTGATTGACAACAGTAAAGGAAGCTACAATGCTATGTTGAGGATTCAGACCGAAGCAATTCGGGTTTCTTCTCCCCATTCAAGTGGCCCATCTCAATTATTTCAGGACACAACATTTGATGATGGCAAGAGGTTAAACAACAATGATCATTTGCTTGATCAAGTAGACAAGGAGCACAAAATGGAGACGGCTACGAGCTGTCGATTGTTTGGAATCGAGCTTATTGATCATGCCAAGAACTCTCCTGCTGTAGAGAAGGCATCATCCATAGCGAATGCATCCGGAGTTACCAATGAGGGCTCTGTTAATACCATGTCCCGAACTGATGCAGACCAAAACTCTGATATAGTTAAGACTTCGAACAAAGAGCGAAAGCACGAAGAGCCGCAACAAGTATCCAAAAGAGAAACTCAAAGCAAGCAAATCTGTAGCAGAAGTTGCACTAAGGTTCAAATGCAGGGGGTTGCTGTGGGGCGCGCCATAGACTTGACCATGTTGGAAGGGTATGATCAACTTGTTGAAGAACTGGAGAAGTTGTTTGATATAAAGGGAGAGCTCCAACACAGAAATACGTGGCAAATTGTCTTCACTGATGACGAAGGTGATATGATGCTTGTTGGCGATGATCCATGGCCTGAATTCTGCAATATGGTGAGAAGAATCTTCATCTGTTCCAGCCAGGACGTGAAGAAAATGAGCTCTGTGAGGACCAAACTACCCCTCTCTTTAACAGAAGAGGAAACTGTAATAAGCTCAGACACAGCTGGGACCTGA	1923	0.454	MLNRRGGEEDELYEQLWEACAGPHVDVPRSGQRVFYFPQGHMEQAEQETDEVYAQITLVPESNQAEPTSPDLCPAELPRPQNHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLITTGWSTFVASKRLVAGDTFVFLRGHNGELRVGLRRNTPQPSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRRCQFIVGLNKYLEAMNHKFAVAMRFKMRFEGEDTPENERRFSGTIVGVEDISPYWVNSNWRSLKVLWDEPASVPRPDRVSPWEIEPLMASVVTSSLQSPVLKNKRPRLPGEVHELDTRSAASTFWDAALAHSDVTQLSVIAESNMSDGTHVWNHKLIDNSKGSYNAMLRIQTEAIRVSSPHSSGPSQLFQDTTFDDGKRLNNNDHLLDQVDKEHKMETATSCRLFGIELIDHAKNSPAVEKASSIANASGVTNEGSVNTMSRTDADQNSDIVKTSNKERKHEEPQQVSKRETQSKQICSRSCTKVQMQGVAVGRAIDLTMLEGYDQLVEELEKLFDIKGELQHRNTWQIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVKKMSSVRTKLPLSLTEEETVISSDTAGT*	641

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ahy4g1551	640	Pfam	Auxin response factor	211	292	IPR010525	GO:0003677\|GO:0005634\|GO:0006355\|GO:0009725
Ahy4g1551	640	Pfam	AUX/IAA family	505	612	IPR033389	-
Ahy4g1551	640	PANTHER	AUXIN RESPONSE FACTOR	45	624	-	-
Ahy4g1551	640	Gene3D	-	82	187	IPR015300	-
Ahy4g1551	640	ProSiteProfiles	B3 DNA-binding domain profile.	85	187	IPR003340	GO:0003677
Ahy4g1551	640	CDD	B3_DNA	83	185	IPR003340	GO:0003677
Ahy4g1551	640	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	45	624	IPR044835	GO:0003677\|GO:0006355\|GO:0009725
Ahy4g1551	640	SMART	B3_2	85	187	IPR003340	GO:0003677
Ahy4g1551	640	Pfam	B3 DNA binding domain	85	186	IPR003340	GO:0003677
Ahy4g1551	640	Gene3D	-	524	616	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy4g1551	Ahy-Chr4	86972661	86977597	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy4g1551	2	616	B3 DNA Binding Superfamily	AT4G23980	54.893	0.0	640

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Ahy4g1551		AUX_IAA	6.30E-13	CL0072

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy4g1551	K14486		-	gmx:100779003	909.827

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Ahy14g1753	14	98830670	98835204	Ahy4g1551	4	86972661	86977597	hybridization
Ahy4g1551	4	86972661	86977597	Ahy12g1798	12	96760442	96765693	PCT
Ahy4g1551	4	86972661	86977597	Ahy2g1545	2	82821531	82827123	PCT
Ahy12g1798	12	96760442	96765693	Ahy4g1551	4	86972661	86977597	PCT
Ahy2g1545	2	82821531	82827123	Ahy4g1551	4	86972661	86977597	PCT

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