Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g1422 ATGGTGGTGGTGATAGAGCAGCAAGAGATCAAGGATCGAAACGCCAATCCCTCCAGGGTGGTTGCCGGTAACGAGGCTTTCGATGGTTTTGAAACGGCCAGCGACACCGACCTTGGCAGTGACAACGGAGGGGATGACGTCGGATCTAGCAGCCATGATCAACCGCTCGAGCAACCGCAGCAGCAACATCAACAGCAGCAGCTGAAGATAGAACATTTGGAGGCGGAGCCGGAGCAGAGTGTTTCTCCAAGTAATAGTTGCCCTGGGGATCTCTTGATCAATGAGGAGTTGGAGAAGAAAGCAATGGTTCAAGCAAATGAAGCAAAGGCAGAAGGGAACAAGCTTTTTGTGGATGGGAAGTATGAGGAAGCATTATCCCAGTATGAACTTGCTTTACAAGTTGCATCTGACATGTCTTCATTGGTTGAAATACGCTCAATATGCCATGCAAACCGTGCTGTGTGCTTTCAGAAACTGGGAAAATATGACAACACAGTTAAAGAATGCACAAAAGCACTAGATCTGAATCCAGTGTACATTAAAGCTTTAGTAAGAAGAGGAGAAGCTCATGAAAAGCTTGAACATTTTGAAGAAGCCATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTAGGAAGGCCATCAGGCGACTTGAGTCGCTTGCTGCAGAAAAGCGGGAAATGATGAAGGAAGAGATGATTGCAAAACTAAAAGAAATGGGAAATTCTTTCCTGGGCCGTTTTGGGATGAGTGTCGATAACTTCAAAGCATGGTGCTAA 795 0.4528 MVVVIEQQEIKDRNANPSRVVAGNEAFDGFETASDTDLGSDNGGDDVGSSSHDQPLEQPQQQHQQQQLKIEHLEAEPEQSVSPSNSCPGDLLINEELEKKAMVQANEAKAEGNKLFVDGKYEEALSQYELALQVASDMSSLVEIRSICHANRAVCFQKLGKYDNTVKECTKALDLNPVYIKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQARKAIRRLESLAAEKREMMKEEMIAKLKEMGNSFLGRFGMSVDNFKAWC* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g1422 264 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Ahy4g1422 264 MobiDBLite consensus disorder prediction 1 67 - -
Ahy4g1422 264 Coils Coil 213 236 - -
Ahy4g1422 264 Pfam Tetratricopeptide repeat 181 213 IPR013105 -
Ahy4g1422 264 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 56 262 - -
Ahy4g1422 264 SMART tpr_5 105 138 IPR019734 GO:0005515
Ahy4g1422 264 SMART tpr_5 146 179 IPR019734 GO:0005515
Ahy4g1422 264 SMART tpr_5 180 213 IPR019734 GO:0005515
Ahy4g1422 264 Coils Coil 56 76 - -
Ahy4g1422 264 Gene3D Tetratricopeptide repeat domain 56 244 IPR011990 GO:0005515
Ahy4g1422 264 MobiDBLite consensus disorder prediction 35 67 - -
Ahy4g1422 264 Pfam Tetratricopeptide repeat 150 177 IPR019734 GO:0005515
Ahy4g1422 264 SUPERFAMILY TPR-like 104 229 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g1422 Ahy-Chr4 72389154 72393626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g1422 74 249 Calmodulin-binding Proteins AT3G25230 34.536 1.51e-16 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g1422 K24926 - gmx:100808386 319.701