Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g1327 ATGCAAGAATTCTTCTTATGTTCAGATATTTGGCAGCATTGGATCAGTGGGAGGAGGCCTTGCTTTAGATGGTTTCAGGTATTGAGAAGTGCTCGAGATCGTCGAGATTTGGTAACCTGTGGGTGTGCAGCAGGAGTTGCTGCTGCATTTAGAGCTCCTGTTGGTGGTGTATTGTTTGCATTGGAAGAGGTAACATCTTGGTGGAGGAATCAACTTATGTGGCGTGTCTTCTTTACTTCTGCAATTGTTGCTGTTGTAGTGCGAACTGCAATGGGATGGTGTAAGAATGGAAATTGCGGATATTTTGGGTCTGGCAGATTCATAATATGGGATATATATCAGAGTAAAGATCTGTGCTTTTACCTTTTTCACTGCCAGTTGAGCATTAAGGTTTTATTTTTGTCCTCTTCCCTTGACTGGTTTTATTTTTAG 432 0.4167 MQEFFLCSDIWQHWISGRRPCFRWFQVLRSARDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRNQLMWRVFFTSAIVAVVVRTAMGWCKNGNCGYFGSGRFIIWDIYQSKDLCFYLFHCQLSIKVLFLSSSLDWFYF* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g1327 143 SUPERFAMILY Clc chloride channel 23 113 IPR014743 -
Ahy4g1327 143 Pfam Voltage gated chloride channel 23 93 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ahy4g1327 143 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 22 119 - -
Ahy4g1327 143 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 22 119 - -
Ahy4g1327 143 Gene3D Clc chloride channel 6 134 - -
Ahy4g1327 143 PRINTS Plant CLC chloride channel signature 78 88 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ahy4g1327 143 PRINTS Plant CLC chloride channel signature 64 72 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ahy4g1327 143 PRINTS Plant CLC chloride channel signature 96 103 IPR002251 GO:0005247|GO:0006821|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g1327 Ahy-Chr4 51958053 51959313 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g1327 19 122 Ion Channels AT5G33280 55.769 6.67e-39 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g1327 K05016 - ahf:114927626 295.819