Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g1318 ATGGCCGGCGAAGTTGTCGGAGACCGGACGCTGGAGCTTCTTGCCATCGTCCACGACATCGCCGGCATGTGTGTCGGAGCCGTTGGGACCGGGTCCTCTGCCGCCGCAGCAGCACCCACACCACCACTTCCCGCCGCCATTGCTGGCGACGGCACCTTCAGGAAGGACTGCACCGATCTGGTGCGACGGATCTCTCTCCTCACGCACCTGTTCGAGGAGATTAAGGAGCTCAACAAGGTTGCCGACTCTGCTTCGAGTTCTTCTTCTGAAAGTGGTGGTGGTGGTGCTGCTGCTTCTGATGGCGATGGTGGTGGTGGTGCTGCTTCTTGGTCGTTTGATGTGGTGGTGGCGCTTCAATCGGCGAAGCGTTTGCTTTCGGTGGCGAGGAACTTCCGTTCCAATTGCTCTTCTGATGGAGCTGCCAAGACCATTATCTTCCAATTTCAGAGTGTGACATGGAAATTGGAAAAACTACTAAGCAACTTACCATATGATCATTTAGAAATTTCAGAAGAAGTCAGAGAACAGGTGGACTTAGTCAGAACACAATTAAGACGGGCCACGGATAAATACGGGTTTATGATTTCACAAATGCCATCATATAAATTATCTGAGCCACTTGCTCAAGAAATCAGTCAGGTTCCTGGTAGAACCACGAGTGGATTGCATAAACAACACAGCTGTCCTGAAAACTTATCAGAATTAGACAAAATCCGTACAAACGATGGAGGGGAAGTTTGCAGCAGACATCAGGGAGTTTCTCGCTTAGAAAGAGCCAGGAGCATCCCTACCATGTCTGAGATCTCCTTAACAAATGTTACTGATACCGAAAGTGAAGAAAACTCCGAGAGTAAGAGCCCACCTGAGGTTAAAAAGTCTGAAGGAGTTCTAATTCCCGAAGACTTTCTTTGCCCTATATCCTTGGAACTAATGAGGGATCCGGTTATTGTTGCCACCGGTCAGACGTATGAGAGATCTTACATACAGAGATGGATAGATTGTGGAAATACAACATGTCCTAAAACCCAGCAGAAGCTCCAGCATTTGACACTTACGCCAAACTATGTTTTAAGGAGCCTTATTTCTCAGTGGTGTATACAGCACAACATTGAACAGCCAACAGGACTAACTAATGGAAAAATAAAGAAGAGTGACGGATCGTTCATAGATGTCACAGGTGACATAGCGGCAATCGAAGTCCTGGTACGGAAGCTCTCCAGCCGGTCTGTCGAGGATTGTAGAGCAGCCGTAACTGAAATTCGATCACTCTCCAAACGTAGCACGGACAACAGGATACTGATTGCTGAAGCCGGAGCAATTCCACTTCTAGTCAACCTTTTAAAATCTGAAGATGTATTGACACAGGATAATGTAGTCACTTCGATTCTCAACCTTTCTATATATGAAAACAACAAGGGACTCATAATGCTTGCGGGTGCCATTCCATCCATCGTCCAGGTTCTCCGAACTGGAACCATGGAAGCAAGAGAAAATGCTGCAGCAACCCTCTTCAGCTTGTCACTTGCCGACGAGAATAAAATAATAATCGGTGCCTCAGGCGCTATACCTGCGTTGGTAGAATTGCTCCAAAATGGGAGCCCAAGAGGGAAGAAAGATGCAGCAACAGCATTGTTCAATTTATGTATTTATCAAGGAAACAAAGGCAGGGCCATTAGGGCAGGGATTATCACAGCACTGTTGAAAATGCTTACAGATTCAAGCAAATCGATGGTGGACGAAGCCCTCACAATAATGTCTGTTCTTGCCAGCCATCAAGAGGCAAAGGTAGCTATAGTTAAAGCCAGCACCATACCAGTTTTAATAGATCTCTTGAGGACCGGATTGCCTCGCAACAAAGAGAATGTGGCCGCCATTTTACTTGCATTGTGCAAGAGGGATACTGAAAATCTTGCTTCTTTAAGTAGACTTGGTGCTGTCATACCTCTTACCGAACTTTCAAGGAGCGGTACAGAGAGGGCAAAGAGGAAAGCTACTTCATTATTGGAGCATCTTCGTATGTTGCAGCAGGTTTGA 2034 0.4666 MAGEVVGDRTLELLAIVHDIAGMCVGAVGTGSSAAAAAPTPPLPAAIAGDGTFRKDCTDLVRRISLLTHLFEEIKELNKVADSASSSSSESGGGGAAASDGDGGGGAASWSFDVVVALQSAKRLLSVARNFRSNCSSDGAAKTIIFQFQSVTWKLEKLLSNLPYDHLEISEEVREQVDLVRTQLRRATDKYGFMISQMPSYKLSEPLAQEISQVPGRTTSGLHKQHSCPENLSELDKIRTNDGGEVCSRHQGVSRLERARSIPTMSEISLTNVTDTESEENSESKSPPEVKKSEGVLIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLISQWCIQHNIEQPTGLTNGKIKKSDGSFIDVTGDIAAIEVLVRKLSSRSVEDCRAAVTEIRSLSKRSTDNRILIAEAGAIPLLVNLLKSEDVLTQDNVVTSILNLSIYENNKGLIMLAGAIPSIVQVLRTGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKVAIVKASTIPVLIDLLRTGLPRNKENVAAILLALCKRDTENLASLSRLGAVIPLTELSRSGTERAKRKATSLLEHLRMLQQV* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g1318 677 Pfam U-box domain 298 369 IPR003613 GO:0004842|GO:0016567
Ahy4g1318 677 SUPERFAMILY ARM repeat 397 671 IPR016024 -
Ahy4g1318 677 SMART Ubox_2 301 364 IPR003613 GO:0004842|GO:0016567
Ahy4g1318 677 MobiDBLite consensus disorder prediction 278 292 - -
Ahy4g1318 677 Gene3D - 388 472 IPR011989 -
Ahy4g1318 677 MobiDBLite consensus disorder prediction 258 292 - -
Ahy4g1318 677 Coils Coil 170 190 - -
Ahy4g1318 677 CDD RING-Ubox_PUB 302 344 IPR045210 -
Ahy4g1318 677 Pfam Armadillo/beta-catenin-like repeat 428 466 IPR000225 GO:0005515
Ahy4g1318 677 Pfam Armadillo/beta-catenin-like repeat 510 548 IPR000225 GO:0005515
Ahy4g1318 677 ProSiteProfiles U-box domain profile. 297 371 IPR003613 GO:0004842|GO:0016567
Ahy4g1318 677 SUPERFAMILY RING/U-box 298 372 - -
Ahy4g1318 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 438 480 IPR000225 GO:0005515
Ahy4g1318 677 Gene3D - 473 575 IPR011989 -
Ahy4g1318 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 561 603 IPR000225 GO:0005515
Ahy4g1318 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 520 562 IPR000225 GO:0005515
Ahy4g1318 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 479 521 IPR000225 GO:0005515
Ahy4g1318 677 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 49 673 - -
Ahy4g1318 677 PANTHER U BOX DOMAIN-CONTAINING 49 673 - -
Ahy4g1318 677 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 297 371 IPR013083 -
Ahy4g1318 677 Gene3D - 576 676 IPR011989 -
Ahy4g1318 677 SMART arm_5 591 631 IPR000225 GO:0005515
Ahy4g1318 677 SMART arm_5 509 549 IPR000225 GO:0005515
Ahy4g1318 677 SMART arm_5 468 508 IPR000225 GO:0005515
Ahy4g1318 677 SMART arm_5 550 590 IPR000225 GO:0005515
Ahy4g1318 677 SMART arm_5 427 467 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g1318 Ahy-Chr4 50003895 50007807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g1318 51 672 U-box Gene Family AT1G23030 61.587 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g1318 - - adu:107484242 1209.13