Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g1129 ATGCCATTGAATGGAGATGGGTATGGACTCATGTTTTATTTTTCCTCCATTTTCCATATTCAATTCAATTTGAATTCAAAAAGGTTCTGTTTATTTGGAATAGATGTCATTGGCCTTTTAACTTCAGTGGGAGAAGAGAAAGAGTATGCAAAAGAGGAAAAAATTGTGAAAATGATTGTGCTTGAATTAAGTTCAAAAGATCTTACAGTGCGATGTGCATTGTTTGGGGACTATGTTAATCAAGTAAATCATTTCCTTGCCTCTGGGTATGTGGAGCAGCCTGTTGTAGTGATTCAACTTGCTAAAGTCAAGTTCTTTAGGGGTCAAGTAGGGCTTCAAAATGTAATGTATGCCACTCAAATGTTATTTAATCCTGATCTTCCTGAAGTTGTTGAATTTAGGCAGAGTATGGTTGAGCAAGGTATCAACGGTACCCAGCCACTGTTTATTGCAAATGAGGGTAAAGTTGTCTCCTTGGAAGATGATTTCATGCGTTTAACTAGAAAATGCACTATTGAAGAGCTTCAAGATAACAATGAGGAGGGTTCTTTTATCACTTTTGGTACAATCCAAGGTATTATTGAGGATGGAGGTTGGTGGTATTCTGCTTGTGTGTGTGGAAAGGGTATCTATCCTCAAAATGGTGCATATTACTGTGATTTTTGTTTGAAGCACATAACTAATGTGACTCCAAGATTTAAAATTAAAATAACAGTTGAAGATCATAGTGGGGAAGGTATTTTCCTTCTCTTTGATCGTGAGGCATCTTATTTGCTTAAGAAATCATGTGCTGACTTATTTACCGAGGTTCAAAGAGATGCAAGTAATAACTTATATGTGGGGATACTTATCCTCCCATATTCCAATGGCTCATTGGAAAGAAGTTACTGCTGA 894 0.3669 MPLNGDGYGLMFYFSSIFHIQFNLNSKRFCLFGIDVIGLLTSVGEEKEYAKEEKIVKMIVLELSSKDLTVRCALFGDYVNQVNHFLASGYVEQPVVVIQLAKVKFFRGQVGLQNVMYATQMLFNPDLPEVVEFRQSMVEQGINGTQPLFIANEGKVVSLEDDFMRLTRKCTIEELQDNNEEGSFITFGTIQGIIEDGGWWYSACVCGKGIYPQNGAYYCDFCLKHITNVTPRFKIKITVEDHSGEGIFLLFDREASYLLKKSCADLFTEVQRDASNNLYVGILILPYSNGSLERSYC* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g1129 297 SUPERFAMILY Nucleic acid-binding proteins 169 273 IPR012340 -
Ahy4g1129 297 CDD RPA1_DBD_C 172 276 IPR013955 -
Ahy4g1129 297 Gene3D - 10 145 IPR012340 -
Ahy4g1129 297 Gene3D - 160 280 IPR012340 -
Ahy4g1129 297 PANTHER REPLICATION FACTOR A 1, RFA1 12 267 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy4g1129 297 Pfam Replication factor-A C terminal domain 187 273 IPR013955 -
Ahy4g1129 297 CDD RPA1_DBD_B_like 35 137 - -
Ahy4g1129 297 SUPERFAMILY Nucleic acid-binding proteins 34 137 IPR012340 -
Ahy4g1129 297 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 12 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g1129 Ahy-Chr4 28155803 28164150 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g1129 34 266 Core DNA Replication Machinery Family AT5G08020 26.016 5.03e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g1129 - - adu:107471135 466.848