Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g1036 ATGGCTTCTCCCCTTCTTCACCAGCCAACGCAGTTCTTTTTCTCCAACACCCAGTTAAAAGGACCTAGCCATGGATTCTTGTGGCGACCCCCTTGTTCTTCATTTGGCGCCTCTCATTCTGAAAACAAAGCTCGGCCCATTAGAGCTTCGGTTGATGCACCCACATTTCCATTGTTTCAGACTCCAAAACAGCATGACTCGGCCTCTGAGTTGGAGCCTGCAGATCCTGATTTCTACAAGATCGGTTATGTCCGAAGCATGAGAGCTTACGGAGTTGAGTTTAAGGAAGGGCGGGATGGATTTGGTGTGTATGCTTCCAAAGATGTGGAACCTCTCCGGCGAGCAAGGGTTATAATGGAAATTCCTCTTGAATTGATGTTAACCATAAGCAAGAAACTCCCATGGATGTTTTTCCCAGATATAATTCCTATAGGTCATCCAATATTTGATATTATCAACTCTACAGATCCAGAGACAGATTGGGACTTAAGGTTAGCTTGCCTCCTCCTATATGCATTTGATTGCGAAGACAACTTTTGGCAGTTGTATGGTGACTTCTTACCAAGTGCAGATGAGTGTACCAGCTTACTTCTAGCTTCAGAGGATGAACTTTCAGAGCTTCAAGATCCCGATCTTGCTTCTACTATGAGAAACCAGCAATATCGAGCCCAAGAATTCTGGGAAATGAACTGGCACAATTCTGCACCCCTTAAAATAAAGCGTCTTGCTCGTGATCCTCGAAGGTTCTTGTGGGCAGTGGGTATTGCACAGTCACGATGTATTAACATGCAGACGAGAATTGGTGCATTAACTCAAGATGCAAATATGCTTATTCCTTATGCTGATATGCTGAACCATTCCTTTGAGCCGAATTGCTTTCTGCATTGGCGTTTTAAGGACAGGATGCTTGAAGTTCTTATAAATGCTGGCGAGCAAATTAAAAGGGGAGATGAGATGACAATTAATTACATGAGCGGACAGAAGAATGAGATCCTAATGCAAAGATATGGATTTTCATCACCGGTGAATCCTTGGGATGTGATCAAATTCTCAGGCAATGCAAAGATTCATCTGGATTCCTTTTTGTCCGTCTTCAATATATCTGGCCTTCCCGAAGAATATTACCATAACACAGAATGTCTAGCAATCAATGGCGATACTTTTGTTGATGGAGCTGTTGTAGCTGCAGCACGAACATTGCCAACTTGGTCGGACAAGGATGTGCCTCCAATCCCTAGTGCAGAAAGAATGGCAGTAAAGGAGTTGCAACAAGAATGTCGACAGATGCTTGCTCAATACGCTACAACCTCTAAGCAAGACGAGAAATTGCTTGATTCCTTGTCGAACGCTCCGAGGACGCTCGAAGCTGCAATTAAGTATAGATTGCACCGGAAATTGTTCATTGAGAAGGTTATCCAAGCATTGGAGATCTATCAAGATAAGATACTTTTCTGA 1455 0.4337 MASPLLHQPTQFFFSNTQLKGPSHGFLWRPPCSSFGASHSENKARPIRASVDAPTFPLFQTPKQHDSASELEPADPDFYKIGYVRSMRAYGVEFKEGRDGFGVYASKDVEPLRRARVIMEIPLELMLTISKKLPWMFFPDIIPIGHPIFDIINSTDPETDWDLRLACLLLYAFDCEDNFWQLYGDFLPSADECTSLLLASEDELSELQDPDLASTMRNQQYRAQEFWEMNWHNSAPLKIKRLARDPRRFLWAVGIAQSRCINMQTRIGALTQDANMLIPYADMLNHSFEPNCFLHWRFKDRMLEVLINAGEQIKRGDEMTINYMSGQKNEILMQRYGFSSPVNPWDVIKFSGNAKIHLDSFLSVFNISGLPEEYYHNTECLAINGDTFVDGAVVAAARTLPTWSDKDVPPIPSAERMAVKELQQECRQMLAQYATTSKQDEKLLDSLSNAPRTLEAAIKYRLHRKLFIEKVIQALEIYQDKILF* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g1036 484 Coils Coil 419 439 - -
Ahy4g1036 484 Pfam SET domain 100 323 IPR001214 GO:0005515
Ahy4g1036 484 ProSiteProfiles SET domain profile. 79 324 IPR001214 GO:0005515
Ahy4g1036 484 Gene3D set domain protein methyltransferase, domain 1 84 338 - -
Ahy4g1036 484 SUPERFAMILY SET domain 99 339 IPR046341 -
Ahy4g1036 484 Pfam Rubisco LSMT substrate-binding 414 465 IPR015353 -
Ahy4g1036 484 CDD SET_LSMT 91 338 - -
Ahy4g1036 484 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 52 477 - -
Ahy4g1036 484 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 335 476 IPR036464 -
Ahy4g1036 484 PANTHER PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 14 52 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g1036 Ahy-Chr4 21210491 21216062 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ahy4g1036 SET 7.40E-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g1036 - - gmx:100790985 795.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g1131 14 21531886 21537790 Ahy4g1036 4 21210491 21216062 hybridization