Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g1002 ATGTCTCGATTTCTCATTCTACCCAAACACTTTGCTTCCATCAATCCATGGCCATGGCTTTCTTTGAGTCTCTTCTCAACTCGTTCTTCTTCTTCAAGATCCAAAGGCAAGTCTTTCACTGTCTCATACCTCGTTGGAACTTGCGGGTTCTCACCAGAACGTGCAGTTTCCGTTTCCAAACGCTTTAGCTTCAAAACAAGCGAAAGACCAGACACAGTGATTGCGTTCTTCAGGAACATTGGGTTATCCCAAACGTCACTGTTCAGAGTCCTCCAATCCATGCCACAGTTACTCGTAGCCAGTCCCGAGAGATCTTTGCAGCCAAAAATCGATTTTTTTAAGTCCAAAGGGTTTTCTACCTCTGATATATGCAAGACCATTGTTAATAACCCTTTGATCCTCATCCGAAGCGTGCAGGTTCAGATAGCTCCCGCGTTTGATTTCTTCGATGACATGTTTCCCTCTAGGGATAAGCTCATCAAAGCTATTATCCGTAATTCGAGTATTCTCTATGACTTTAAAATATATGTAGAACCTAATATAAAGCTGCTTAGAGAAGCAGGAGTTCCTATTTCACATGTTATTAGGTTAATAGAATACTGCCCTCGCCAATTGAAGGCAAACCCTAAGAGGTTTAAGGAGGTATTGCAGGAAATTAAGGAGATGAAGTTTGATCCCTTCAAGTTTCAATTTGTTGTGGCTATTTATGTGAATGTAACCGTAGGAAAATCCTCATTGGCAAGAAGGAAAGGTATTTATAGAAAGTGGGGTTGGACCGATGGCAATATTTTTGCAGCATTTAGAAACCATCCGTGGTGTCTTGTCATCTCGGATGACAAGATTGAAGCAATCATGGATTATCTGGTGAATGAATTGGGTTATTCCGCTTCTTCTATATCTAGTAATCCCTGGGTGTTGTCCATGAGTTTGAAAAGGCGGATTATTCCCAGGGGTTCTGTTATTCTAGTTTTGCAGTCTAAGGGTCTGGGGAGGAAGCTGGGCTTGGGTACAATATTTAGGTGCAATGAAGAGATCTTCTTGAATAAGTTTATCTTCCGCCATGAGAAAGAAGCTGACGATCTATTGAAGTTGTATCAAGCTAATTTAGGAAAAGAGCAAGTCCATAAGAGAAAAGAATGTAATGATTAA 1149 0.4082 MSRFLILPKHFASINPWPWLSLSLFSTRSSSSRSKGKSFTVSYLVGTCGFSPERAVSVSKRFSFKTSERPDTVIAFFRNIGLSQTSLFRVLQSMPQLLVASPERSLQPKIDFFKSKGFSTSDICKTIVNNPLILIRSVQVQIAPAFDFFDDMFPSRDKLIKAIIRNSSILYDFKIYVEPNIKLLREAGVPISHVIRLIEYCPRQLKANPKRFKEVLQEIKEMKFDPFKFQFVVAIYVNVTVGKSSLARRKGIYRKWGWTDGNIFAAFRNHPWCLVISDDKIEAIMDYLVNELGYSASSISSNPWVLSMSLKRRIIPRGSVILVLQSKGLGRKLGLGTIFRCNEEIFLNKFIFRHEKEADDLLKLYQANLGKEQVHKRKECND* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g1002 382 Pfam mTERF 141 346 IPR003690 GO:0003690|GO:0006355
Ahy4g1002 382 Pfam mTERF 75 225 IPR003690 GO:0003690|GO:0006355
Ahy4g1002 382 Gene3D Transcription termination factor 3, mitochondrial 172 364 IPR038538 -
Ahy4g1002 382 Gene3D Transcription termination factor 3, mitochondrial 52 171 IPR038538 -
Ahy4g1002 382 SMART mt_12 160 190 IPR003690 GO:0003690|GO:0006355
Ahy4g1002 382 SMART mt_12 296 330 IPR003690 GO:0003690|GO:0006355
Ahy4g1002 382 SMART mt_12 264 295 IPR003690 GO:0003690|GO:0006355
Ahy4g1002 382 SMART mt_12 88 119 IPR003690 GO:0003690|GO:0006355
Ahy4g1002 382 SMART mt_12 195 225 IPR003690 GO:0003690|GO:0006355
Ahy4g1002 382 SMART mt_12 124 154 IPR003690 GO:0003690|GO:0006355
Ahy4g1002 382 PANTHER CGI-12 PROTEIN-RELATED 30 370 IPR003690 GO:0003690|GO:0006355
Ahy4g1002 382 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 30 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g1002 Ahy-Chr4 20131343 20133745 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ahy4g1002 mTERF 1.70E-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g1002 K15032 - qsu:111987836 294.664