Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0991 ATGCACTTAATCTTATATATAATGGGATTCGATCTCACCTCGATTCTCATTCTATTATATACTCAAAAAACCTTCATCAAAAGAGAAGAGTGTCTTATTGAATTATTCTTTGAAAGAAAAATGGTTGATAACATTGGAGGTAGTGGTTCTTCTAATAATGAAGGCATCATCAAGGAGCAAGATCGGTTGCTGCCAATAGCCAATGTTGGTAGGATCATGAAGCAGATTCTTCCTCAGAATGCGAAAATCTCGAAGGAGGCGAAGGAGACGATGCAGGAGTGCGTGTCGGAGTACATTAGCTTCGTGACGAGCGAGGCGTCGGAGAAATGCCGGAAGGAGAGGAGGAAGACTGTTAATGGTGATGACATTTGTTGGGCGCTCGCAACGCTCGGTTTTGATGACTATGCCGAAGGGATGAGAAGGTATTTACAAAGGTATAGAGAGTTAGAGGTTGATAATAATAATCAAGAGAGAGGGAAATAA 483 0.4141 MHLILYIMGFDLTSILILLYTQKTFIKREECLIELFFERKMVDNIGGSGSSNNEGIIKEQDRLLPIANVGRIMKQILPQNAKISKEAKETMQECVSEYISFVTSEASEKCRKERRKTVNGDDICWALATLGFDDYAEGMRRYLQRYRELEVDNNNQERGK* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0991 160 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 41 159 IPR027113 GO:0001228|GO:0006355|GO:0016602
Ahy4g0991 160 SUPERFAMILY Histone-fold 60 156 IPR009072 GO:0046982
Ahy4g0991 160 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 41 159 - -
Ahy4g0991 160 ProSitePatterns NF-YB/HAP3 subunit signature. 94 110 IPR003956 GO:0005634|GO:0006355|GO:0043565
Ahy4g0991 160 PRINTS CCAAT-binding transcription factor subunit A signature 110 128 - -
Ahy4g0991 160 PRINTS CCAAT-binding transcription factor subunit A signature 129 147 - -
Ahy4g0991 160 PRINTS CCAAT-binding transcription factor subunit A signature 91 109 - -
Ahy4g0991 160 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 63 127 IPR003958 -
Ahy4g0991 160 Gene3D Histone, subunit A 53 160 IPR009072 GO:0046982
Ahy4g0991 160 Coils Coil 139 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0991 Ahy-Chr4 19573317 19574159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g0991 56 157 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.490 6.76e-56 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Ahy4g0991 CBFD_NFYB_HMF 4.20E-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0991 K08065 - gmx:100794513 195.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g1086 14 19525147 19526147 Ahy4g0991 4 19573317 19574159 hybridization
Ahy11g2541 11 141277020 141277454 Ahy4g0991 4 19573317 19574159 PCT
Ahy1g2385 1 101917368 101917975 Ahy4g0991 4 19573317 19574159 PCT
Ahy4g0991 4 19573317 19574159 Ahy11g2541 11 141277020 141277454 PCT
Ahy4g0991 4 19573317 19574159 Ahy1g2385 1 101917368 101917975 PCT