Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0933 ATGACGATAAACAACAGCACTCCAAATCCAATAACACTCACTGAGGCGAATTCAAGAGGCTACAATCTCAGCGGCAAGATCATGCTAACCGCCATTATCCTCCTCTTCTTTCTCGTTCTCCTCATGCTCTCTCTCCACCTTTACGCTCGCTGGTACCTTACCCGCGCCCGCCGCCGCCACCACCTCCGCCGCAACCTTCGCCGCCGCCGCACCAACATCGTCTTTTACATCGACCCTCCCACTCTCTCCGCTTCCCACGGCCTTGACCCCGCCCTCCTTGACTCTATTCCCATCTTCACCTACCACCCGCCAAATCCGCCGGAATGCGCCGTCTGCTTATCGGAGTTCGAACCGGGAGAAACTGGTCGGATCTTGCCAAAATGCAACCACGTGTTTCACACCGATTGCATAGACATGTGGTTCCATTCTCATACCACGTGTCCGCTATGCAGAGCTCCTGTGGAGCATCAACCCGAAGCGGAAACCCGACCCGAAGAAGTTGTTATAACGGTTTGCGAAAGCGAAACCGGTTCGAGTTCCGGGATCTGTCCGCAAGAAGTCAACCGGAGTGGAACTGGAACCGGAAGGGAGAGGAGGAAGCTTTCTCCGGTGATGGTGGAGCTTCCGGCGAGGACTAGCGAGGGTTTTAGTGACGAGTCAGGTGGTCACGAGTCGCCGCAGCTGTCGTCGTCGTCGTCGTTTCGTTCTCCGATGAGTCGAATGCTTTCGTTCAAAAGAATCCTCAGCAGGGAACGGAAAGGGAGCGTGTCTCCAGGCGGCAGTGGAAGTTGTAGCACCGCGGCTGAGGTGGGGGACGCAGAGCGAGGTGGTGAAAAAGAGGAGACTCTGAGATAG 855 0.5602 MTINNSTPNPITLTEANSRGYNLSGKIMLTAIILLFFLVLLMLSLHLYARWYLTRARRRHHLRRNLRRRRTNIVFYIDPPTLSASHGLDPALLDSIPIFTYHPPNPPECAVCLSEFEPGETGRILPKCNHVFHTDCIDMWFHSHTTCPLCRAPVEHQPEAETRPEEVVITVCESETGSSSGICPQEVNRSGTGTGRERRKLSPVMVELPARTSEGFSDESGGHESPQLSSSSSFRSPMSRMLSFKRILSRERKGSVSPGGSGSCSTAAEVGDAERGGEKEETLR* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0933 284 MobiDBLite consensus disorder prediction 176 284 - -
Ahy4g0933 284 Pfam Ring finger domain 108 151 IPR001841 -
Ahy4g0933 284 SMART ring_2 109 150 IPR001841 -
Ahy4g0933 284 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Ahy4g0933 284 MobiDBLite consensus disorder prediction 176 191 - -
Ahy4g0933 284 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 16 176 - -
Ahy4g0933 284 CDD RING-H2_EL5_like 108 151 - -
Ahy4g0933 284 SUPERFAMILY RING/U-box 108 158 - -
Ahy4g0933 284 MobiDBLite consensus disorder prediction 219 239 - -
Ahy4g0933 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 161 IPR013083 -
Ahy4g0933 284 PANTHER RING-H2 FINGER PROTEIN ATL64 16 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0933 Ahy-Chr4 17378060 17379329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g0933 1 279 Rapid Response to Elicitors AT3G16720 47.869 1.10e-75 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0933 - - gsj:114368044 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g1029 14 17835009 17836338 Ahy4g0933 4 17378060 17379329 hybridization
Ahy11g2585 11 142023409 142024583 Ahy4g0933 4 17378060 17379329 PCT
Ahy1g2342 1 101415703 101416806 Ahy4g0933 4 17378060 17379329 PCT
Ahy4g0933 4 17378060 17379329 Ahy11g2585 11 142023409 142024583 PCT
Ahy4g0933 4 17378060 17379329 Ahy1g2342 1 101415703 101416806 PCT