Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0888 ATGGCCATGGCCTTGCATGACCATGTCTTCTTCTACATCTTTGTCATCATCTCCGCCGCGCCATTATCGCTCTCTCAGCCGCAAGCCGCCTCCTCCTGCAACGGAATATTCCTTTCTTACACTTACACGGGCGGCTACCGCCTGCCGCCGAACACGTCCGACACCGCGGACCAGCCATACCGGTTCACGTCGGAGCTGACGGTGCTAAACTACGGCCTAGAGGATCTGAAGTCATGGAAGGTGTTCGTGGGTTTCCGGCACCGGGAGTGGCTGGTTTCCGCGTCGAACGCGGAGCTGGCGGACGGCACAGGGCTCCCTGCTGCCGTCGGAAACGGGACAGTTTTGGAGGGGTCCGAGGTGAGGGACTTGAAGACGGCAGCGGAGACCGCGGGGGACTTAAAACAGATGATGCTAACGGTGGGCATGGTGGGGACGGTGTTTGGGGTGGCGCCACCCAATGTTCCCATGCCTTCCACCATTAGGCTCTCTAATGATGGTTTTATTTGTCGTAAACCCACTTCTCAAGGTAACAATGAGACACATACATGTTGCACAGTTGATCCCAATTCCAAAACAAACACACCCACAGATGAACAAGAATTCCCACTCCCTCAGAAAGGTGGTGACCTTAGCATAATCTATGATGTCACAAAAACATATGATTCGAATTACTGGGCAGAGGTCACAGTTTCAAACAAAAACTCCATTGGCCGTCTTGACCATTGGAAACTCAGCTGGGAATGGATCAATGATGAGTTCATATACACAATGAAAGGTGCATATCCATCAAATGTTGATTCTTCTGAATGTATCTTTGGTTCACAAGGTGAGTACTACAAGGAACTTGACTTTGCCGATGTGTTGAACTGTGAAAGAAGGCCAACCGTAGTTGATCTCCCTCCATCAAGGTTCAATGATTCAAAACTTGGTAAAGTCCCATTTTGCTGCAGAAATGGTACATTGTTGCCACCCACAATGGATCCTAGTAAGTCAATTTCAAGGTTCCAAATGCAGGTCTTCAAGATGCCTCCGAACATCAATCGTTCCCACCTTGCGCCACCTAGGAACTGGAAGATAAGTGGTGAGGAACTCAACCCTGAATACCAATGTGGGAATCCTGTTAGGGTGAGTCCTAGCGAGTCTCTGGATCCAACAGGGTTGCCATCAAATACATCTGCAATTGCAAGTTGGCAAATTCTCTGCAACATAACAAGGAACACAAGAAAAAGCAAATGTTGTGTCTCATTTTCAGCTTTTTTCAATGAATCTGTTGTTCCCTGCCAAACATGTGCATGTGGATGCTCCGCGAAGCCAGAGAGGACGTGCAGTGTGGCTGAACCGGCTGTGCTGCTTCCCCCGGAGGCACTTCTTGTTCCATTTGAGAATAGAACAAAAATGGCTCATACTTGGGCTGAAAGAAAGCATCTATCAGTGCCTAATCCTATGCCTTGTGGTGATAACTGTGGTGTGAGCATCAACTGGCATGTGAATACAGATTACCGGCGAGGTTGGACTGCAAGGATCACGCTTTTCAACTGGGGCGAAACTGATTTCGCAGACTGGTTTGTCGCAGTGGAAATGGATAAAGCGGCCCCTGGTTTTGAGAAAATGTACTCATTCAATGCTAGTTCATTAGACAAAGTGAAGAACACAATATTCATGCAAGGAAAGGAAGGATTGAACTTCCTTGTAGCCGAAGCAAATGGATCCAACCCAAAAAAAGATCCGAAGGTGCCCGGGAAACAACAATCCGTGATCTCATTTAGAAAGAAAAATACTCCTGGAATCAAAGTGGTAGATGGTGATGGATTTCCCAATAAAGTATTCTTCAATGGGGAGGAATGTTCTCTTCCTTTGGTATATCCAAGCAGTGGTTTCAGGAATGAGTTTTCTTTTGTTCCCGTGTTGCTCCTGATGTTGTTGCCAATCATATGGATGTGGCAATAG 1947 0.4746 MAMALHDHVFFYIFVIISAAPLSLSQPQAASSCNGIFLSYTYTGGYRLPPNTSDTADQPYRFTSELTVLNYGLEDLKSWKVFVGFRHREWLVSASNAELADGTGLPAAVGNGTVLEGSEVRDLKTAAETAGDLKQMMLTVGMVGTVFGVAPPNVPMPSTIRLSNDGFICRKPTSQGNNETHTCCTVDPNSKTNTPTDEQEFPLPQKGGDLSIIYDVTKTYDSNYWAEVTVSNKNSIGRLDHWKLSWEWINDEFIYTMKGAYPSNVDSSECIFGSQGEYYKELDFADVLNCERRPTVVDLPPSRFNDSKLGKVPFCCRNGTLLPPTMDPSKSISRFQMQVFKMPPNINRSHLAPPRNWKISGEELNPEYQCGNPVRVSPSESLDPTGLPSNTSAIASWQILCNITRNTRKSKCCVSFSAFFNESVVPCQTCACGCSAKPERTCSVAEPAVLLPPEALLVPFENRTKMAHTWAERKHLSVPNPMPCGDNCGVSINWHVNTDYRRGWTARITLFNWGETDFADWFVAVEMDKAAPGFEKMYSFNASSLDKVKNTIFMQGKEGLNFLVAEANGSNPKKDPKVPGKQQSVISFRKKNTPGIKVVDGDGFPNKVFFNGEECSLPLVYPSSGFRNEFSFVPVLLLMLLPIIWMWQ* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0888 648 Pfam COBRA-like protein 224 404 IPR006918 GO:0010215|GO:0031225
Ahy4g0888 648 PANTHER COBRA-LIKE PROTEIN 7 1 644 - -
Ahy4g0888 648 PANTHER COBRA-LIKE PROTEIN 7 1 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0888 Ahy-Chr4 15083103 15086371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g0888 17 631 COBRA Gene Family AT4G16120 60.979 0.0 792
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0888 - - mtr:MTR_2g034950 954.896
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g0972 14 16202560 16206010 Ahy4g0888 4 15083103 15086371 hybridization
Ahy11g2614 11 142360673 142363214 Ahy4g0888 4 15083103 15086371 PCT
Ahy1g2317 1 101174384 101176856 Ahy4g0888 4 15083103 15086371 PCT
Ahy4g0888 4 15083103 15086371 Ahy11g2614 11 142360673 142363214 PCT
Ahy4g0888 4 15083103 15086371 Ahy1g2317 1 101174384 101176856 PCT