Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0883 ATGTCAGAAGGAACCAGTCTGGTGCTGGAATCGTCCGAGAATTGCACAGATTTGTCTCAGGATGAGATTGGCACGATTGAGGAAACACCAGAGGAAACAATTTTATCAAGACAGACTTCTGTCAACCTTGTTCCTTTTATTGGTCAGAGATTTGTTTCTCAAGAAGCTGCTTATGAATTCTATTGCAGTTTTGCTAAGCAGTGTGGCTTTTCTATTCGGCGACACCGCACTCGAGGGAAGGACGGTGTTGGTCGCGGAGTCACAAGGAGGGATTTTACTTGCCATCGTGGTGGATACCCCCAGGTCAAACCTTCTGATGATGGGAAGATGCAAAGGAACCGCAAATCATCTCGTTGTGGTTGCCAAGCATACTTGCGTATTGTTAAAAAGTCGGATTTTGATGTCCCTGAGTGGCGTGTTACTGGCTTTAGCAATGTCCACAATCACGAGTTGTTAAAATCTAATGAGGTGCGGCTTCTTCCGGCATACTGCACAATATCTCCTGATGACAAGAGCCGCATATGCATGTTTGCTAAAGCAGGGATGTCAGTGAGGCAAATGTTAAGATTGATGGAACTAGAGAAAGGCATCAAAGTCGGTTGCCTTCCTTTTACGGAAATGGATGTGAGAAACCTGTTGCAGTCTTTCAGAAATGTTGAAAGAGACAATGATGCCATTGATCTAATTGCTATGTGCAAGAGATTAAAAGATGAAAATCCAAATTTCAAGTATGAATTCAAGATAGACAGTAATAACAGGCTGGAGCACATTGCATGGTCTTACAGCTCATCTGTTCAATCGTACGAGTCATTTGGAGATGCTGTGGTTTTTGACACCACACACCGAGTAGACGCCTATGACATGCTGTTGGGAATCTGGCTTGGAGTGGACAATCATGGGATGACTTGTTTCTTTGGTTGCACACTTCTACGGGATGAAAATATGCAGTCTTTTTCATGGGCTTTAAAGGCTTTCATGGGCTTCATGAAAGGAAAATCTCCGCAAACAATATTAACTGATCATAACATGTGGCTGAAAGAAGCTATTGCTGTTGAAATGCCAGAAACAAAACATGCCTTTTGTATATGGCATATTCTTTCTAAGTTGTCTGACTGGTTTTCTGTTCTACTTGGATCTCATTATGACGAGTGGAAAGCTGACTTCCTCCAGCTCTACAATTTGGAACTGATGGAAGATTTCGAAGAAGGGTGGAGGCAAATGATTGATAAATATCGACTCCACACGAACAAACATATTATTAGCCTACATTCATTAAGGATGTTTTGGGCTCTACCATTCTTGAGGCGTTACTTTTTTGCAGGATTGACCAGCACAAGTCAATCCGAGTCCATTAATGCTTTCATCCAACGGTTCTTGAGCGCTCAATCTCAATTGGACCACTTTGTTGAGCAAGTCTGTGATGTGGCAGATATTGTTGATTTTAACGACCGGGTTGGATTGAAGCAAAAAATGCAACGGAAAGCGCAGAAAGTGTGCCTCAAAACAGGCTCGCCTGTCGAATCTCATGCTGCCACTGTCCTTACACCTTATGCCTTAAGTAAACTCCAGGATGAGCTAGTTTTGGCGCCGCAGTATGCATCCTTTCTGGTGGATGAAGGTTGCTTCCAGGTCAGACATCACACTCAGACAGACGGAGGCTGCAAAGTATTTTGGGTTCCTTGTCAAGCGCACATTACCTGCAGCTGCCACCTGTTCGAGTTTTCAGGAACCTTATGCAGACATGTTCTACGTGTCATGTCGACCAATAACTGTTTTCACATCCCCGACCAATACCTACCCACCCGTTGGAGAGGTGGTGGTTTGTCTTCTGTCAACCAGTTTCGGGGCGTAACAACAAGGGATCAGCCTGAAAGGATGCAATTTTTGGAATCCATGGTTTCAACGCTTATAATGGAATCCATTGAAACAGAGGAACGCCTTGATGTTGCTTGCGAGCAAATGTCTGTGGCGCTGTCACGTATCAAAGCCCTTCCAAGGCCGCCGGCACATGGGGTGAATGACATCACATATAGTTATTCGTCGGATTCATTGATCCTACCAGAGGTAGAAGATACTGATGGAATAATTCATGGTTTTGCAAACCCCCACGATAGTATTGCCTTAGGAAAGCTAAAGGAGAGAAGGGCGAGGGATGTCGTTGATGTCACGAGGAAGCGTAGGCAGTTTCCGGGGCCGTTGTGTGGGCAATATGTGCATGATCCTTCCGATTGCTCAATAATGGCAGGTGATAATCTAGGTGGAGATGGATTAGGGTATTTGTAG 2283 0.4442 MSEGTSLVLESSENCTDLSQDEIGTIEETPEETILSRQTSVNLVPFIGQRFVSQEAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGYPQVKPSDDGKMQRNRKSSRCGCQAYLRIVKKSDFDVPEWRVTGFSNVHNHELLKSNEVRLLPAYCTISPDDKSRICMFAKAGMSVRQMLRLMELEKGIKVGCLPFTEMDVRNLLQSFRNVERDNDAIDLIAMCKRLKDENPNFKYEFKIDSNNRLEHIAWSYSSSVQSYESFGDAVVFDTTHRVDAYDMLLGIWLGVDNHGMTCFFGCTLLRDENMQSFSWALKAFMGFMKGKSPQTILTDHNMWLKEAIAVEMPETKHAFCIWHILSKLSDWFSVLLGSHYDEWKADFLQLYNLELMEDFEEGWRQMIDKYRLHTNKHIISLHSLRMFWALPFLRRYFFAGLTSTSQSESINAFIQRFLSAQSQLDHFVEQVCDVADIVDFNDRVGLKQKMQRKAQKVCLKTGSPVESHAATVLTPYALSKLQDELVLAPQYASFLVDEGCFQVRHHTQTDGGCKVFWVPCQAHITCSCHLFEFSGTLCRHVLRVMSTNNCFHIPDQYLPTRWRGGGLSSVNQFRGVTTRDQPERMQFLESMVSTLIMESIETEERLDVACEQMSVALSRIKALPRPPAHGVNDITYSYSSDSLILPEVEDTDGIIHGFANPHDSIALGKLKERRARDVVDVTRKRRQFPGPLCGQYVHDPSDCSIMAGDNLGGDGLGYL* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0883 760 Pfam SWIM zinc finger 564 587 IPR007527 GO:0008270
Ahy4g0883 760 ProSiteProfiles Zinc finger SWIM-type profile. 557 590 IPR007527 GO:0008270
Ahy4g0883 760 Pfam FAR1 DNA-binding domain 59 152 IPR004330 -
Ahy4g0883 760 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 8 740 - -
Ahy4g0883 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 8 740 IPR031052 GO:0006355
Ahy4g0883 760 Pfam MULE transposase domain 275 367 IPR018289 -
Ahy4g0883 760 SMART 26again6 565 592 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0883 Ahy-Chr4 14874863 14879016 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Ahy4g0883 MULE 3.00E-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0883 - - var:108322310 1345.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g0966 14 16071057 16075280 Ahy4g0883 4 14874863 14879016 hybridization