Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0868 ATGGCACAAATAGCAATGCCCGTAGCTCCCTCTCTCGCCCTAATCTCAAACCCTAGACCTCTTTCCAGAGCCGTCTATTTCCCTGTTCTCAACCCTCCCAAGGCGAGAGGGTTAAGCATAGAGTGCGCTCGTGTTGGCGGAGTGGAGATTCCGAACAACAAGAGAATCGAGTTCTCGCTACAGTACATCCATGGAATCGGAAGGAGCAGAGCTCGCAAGATTCTCTGCGATATAAGCATGGACAACAAGGTCACTAAGGATCTCAGTGAAGAGGAACTCATCACTCTTAGAGATGAAGTCTCCAAATACGTCATTGAAGGGGATTTGAGGAGGTTTAATGCGCTGAATATAAGGAGATTGAAGGAGATTCAATGTTACAGAGGAATAAGGCATATTCAGGGGCTTCCTTGCCGAGGACAACGTACGAAGAACAATTGCCGGACCTTGAAGGGTAAGAAGGTTGCTATTGCTGGCAAGAAGAAGAAGTAA 489 0.4724 MAQIAMPVAPSLALISNPRPLSRAVYFPVLNPPKARGLSIECARVGGVEIPNNKRIEFSLQYIHGIGRSRARKILCDISMDNKVTKDLSEEELITLRDEVSKYVIEGDLRRFNALNIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKK* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0868 162 Hamap 30S ribosomal protein S13 [rpsM]. 42 158 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Ahy4g0868 162 ProSiteProfiles Ribosomal protein S13 family profile. 45 151 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Ahy4g0868 162 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 1 161 - -
Ahy4g0868 162 Pfam Ribosomal protein S13/S18 44 148 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Ahy4g0868 162 SUPERFAMILY S13-like H2TH domain 43 154 IPR010979 GO:0003676
Ahy4g0868 162 PANTHER 37S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIAL 1 161 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Ahy4g0868 162 TIGRFAM uS13_bact: ribosomal protein uS13 44 153 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Ahy4g0868 162 Gene3D - 43 111 - -
Ahy4g0868 162 Gene3D 30s ribosomal protein s13, domain 2 112 162 IPR027437 -
Ahy4g0868 162 ProSitePatterns Ribosomal protein S13 signature. 127 140 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0868 Ahy-Chr4 14616792 14622093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g0868 44 160 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 32.867 2.96e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0868 K02952 - tcc:18592264 248.44