Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0865 ATGGAGGGTCTGCGGCAAATATGGTGTCAACAGCACCGGTCTCTTTCTCAGCTTCTTTTCCTCCGATCAATTTCTTCCAAGATTTTTGTCAAAGGTTTAGCATTTTCTACCACAAAAGAGAAATTAGCTGAAGCCTTTTCAGAATATGGCAATGTCCTAAATGCTGATATAGTACTGAACAAAGCCAAGAACAGATCTAAGGGTTTTGGATATGTGACCTTTGCTAAGGAGGAAGAAGCCCGCAAGGCACAAATGGCTATGAATGGAAAGATATTGCATGGACGTGTTCTGTACGTGGATATGGAACCAAATAAGAAACCAGAAAAATCATCTTTTGACAAGGCAACTACTGATGGTTGA 360 0.4056 MEGLRQIWCQQHRSLSQLLFLRSISSKIFVKGLAFSTTKEKLAEAFSEYGNVLNADIVLNKAKNRSKGFGYVTFAKEEEARKAQMAMNGKILHGRVLYVDMEPNKKPEKSSFDKATTDG* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0865 119 PANTHER TRANSFORMER-2-RELATED 21 105 - -
Ahy4g0865 119 SUPERFAMILY RNA-binding domain, RBD 26 107 IPR035979 GO:0003676
Ahy4g0865 119 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Ahy4g0865 119 PANTHER RNA RECOGNITION MOTIF 21 105 - -
Ahy4g0865 119 SMART rrm1_1 27 100 IPR000504 GO:0003723
Ahy4g0865 119 Gene3D - 16 114 IPR012677 -
Ahy4g0865 119 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 104 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0865 Ahy-Chr4 14568070 14574277 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g0865 20 99 Eukaryotic Initiation Factors Gene Family AT1G22760 41.250 2.85e-14 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0865 - K13195 gmx:100527061 145.976