Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0820 ATGAAACTCAATTCAGAGATGGGTTCATCATCTCTGATTCCAACAGCACTCACCTCTACCCCATCACGTGACTCGCACGTGCACAACCACAACAAGAAGAAAAAGCCTCATTCCAAGAACCACAAACAGAAGAACAACCGCCAAGTCAACAAATGGAAATCCCAAACACAACAAAACCTCTACTCCACCAAACTCCGGCAAGCCCTCGCCGGATCCACCCTCTCGGGCGGCGGTAAATCCATCCGCGAAACCGCCGACAGAGTTCTTGCCAGCGCCGCAAGAGGTAGAAGCCGGTGGAGCCGCGCCATACTCACGAACCGGCTCAAGCTGAGCTTCATGAAGAACAAGATAAAGAAGAAGAAGAAAAGAGTGGGACCGGTGGTCAGGTCGAGAAGAACAAGAACCCGGTTGAACGTGGTTCGATTGAAGGTAAAGACAGTTCCGGCGGTTCAGAAGAAAGTGAGGTTGTTGGGAAGGTTGGTTCCTGGTTGCAGGAAGGAACCTCTTCCGGTGATTCTAGAAGAAGCCATTGATTATATACCTGCTCTTGAGATGCAGGTTCGCGCCATGACTGCTCTCGCTAACTTGTTGTTAGCGAATTCTTCTTCTTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCGGTCATGCTCCTCCCACCTGA 672 0.5 MKLNSEMGSSSLIPTALTSTPSRDSHVHNHNKKKKPHSKNHKQKNNRQVNKWKSQTQQNLYSTKLRQALAGSTLSGGGKSIRETADRVLASAARGRSRWSRAILTNRLKLSFMKNKIKKKKKRVGPVVRSRRTRTRLNVVRLKVKTVPAVQKKVRLLGRLVPGCRKEPLPVILEEAIDYIPALEMQVRAMTALANLLLANSSSSPSSSSSSSSSSSSGHAPPT* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0820 223 MobiDBLite consensus disorder prediction 1 24 - -
Ahy4g0820 223 MobiDBLite consensus disorder prediction 1 57 - -
Ahy4g0820 223 MobiDBLite consensus disorder prediction 201 223 - -
Ahy4g0820 223 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 203 IPR036638 GO:0046983
Ahy4g0820 223 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 21 215 IPR044660 GO:0006355
Ahy4g0820 223 CDD bHLH_AtIBH1_like 148 194 IPR044549 GO:0006355
Ahy4g0820 223 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 21 215 - -
Ahy4g0820 223 MobiDBLite consensus disorder prediction 27 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0820 Ahy-Chr4 12860579 12861694 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g0820 49 193 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G17100 47.531 4.33e-42 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0820 - - aip:107638969 300.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g0905 14 14589318 14590449 Ahy4g0820 4 12860579 12861694 hybridization
Ahy11g2668 11 142944599 142945673 Ahy4g0820 4 12860579 12861694 PCT
Ahy1g2270 1 100613109 100614169 Ahy4g0820 4 12860579 12861694 PCT
Ahy4g0820 4 12860579 12861694 Ahy11g2668 11 142944599 142945673 PCT
Ahy4g0820 4 12860579 12861694 Ahy1g2270 1 100613109 100614169 PCT