Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0789 ATGGATATGAAACGAAGGCTAAACAACAACAACAATGACAATAACGACAATGACATGGACCTCCGAAGAGGTCCATGGACCGTCGACGAAGACCTTACCCTCATCAATTACATTGCCAATCACGGCGAAGGTCGCTGGAATTCTCTTGCCCGCTCTGCCGGACTGAAACGAACCGGGAAGAGCTGCAGATTGAGATGGTTGAATTATTTGCGCCCAGATGTTAGACGTGGTAACATCACTCTTGAAGAACAGCTTCTTATTCTTGAGCTCCATGCTAGTTGGGGAAACAGATGGTCGAAAATTGCTCAATACCTACCTGGAAGAACTGACAACGAGATCAAGAACTATTGGAGAACTCGTGTTCAAAAGCATGCGAAACAACTCAAATGTGATGTAAATAGCAAGCAATTCAAGGACACCATGCGCTTCCTTTGGATGCCAAGACTAGTGGAACGGATACAGGCGGCCGCAGCAACGGTTACAACTGCTGCGACCGCCGCTCCCAATTCTCCGACTTTATCAGCTACTAAATCAGTCACTATTATCAACAACAATAATACTACTACAGCGTACAACTTCGACAACCTTAACAACAAAAACAACTTGGAGGTTCATGGTGGAAACATTATGAATATGAGCAACAACAACTTTGGCTATGCTACTCCATCAGAGAATAGTAGCACAGGAACATCATCAGATTCGTTTGTCACACAAGATTGTTACAACAATAATAATAATGTTCATGTTGGTAACAACAACAATGACCCTAGTTCGGATTATTACCATCAACAAGGAAATAACAACAACCAAGTTAGCTTCATGGATTGCATCACTAGTCCATCCTCCATGTCATTGTTCCCACATCAAGAGATGGATTTCCAAGCCATGGAATTACCAAACACCCCTTGGATTAATAATCCCTCTACATTCAGCAATTTCTGGAATGATGAAAACATGTTGCTTCTACAAAATCTAGGATGTGGTGGTGACAACATGTGA 999 0.4244 MDMKRRLNNNNNDNNDNDMDLRRGPWTVDEDLTLINYIANHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHASWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRFLWMPRLVERIQAAAATVTTAATAAPNSPTLSATKSVTIINNNNTTTAYNFDNLNNKNNLEVHGGNIMNMSNNNFGYATPSENSSTGTSSDSFVTQDCYNNNNNVHVGNNNNDPSSDYYHQQGNNNNQVSFMDCITSPSSMSLFPHQEMDFQAMELPNTPWINNPSTFSNFWNDENMLLLQNLGCGGDNM* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0789 332 SMART sant 22 72 IPR001005 -
Ahy4g0789 332 SMART sant 75 123 IPR001005 -
Ahy4g0789 332 CDD SANT 96 119 IPR001005 -
Ahy4g0789 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 74 IPR017930 -
Ahy4g0789 332 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Ahy4g0789 332 Gene3D - 80 142 - -
Ahy4g0789 332 Gene3D - 20 76 - -
Ahy4g0789 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 125 IPR017930 -
Ahy4g0789 332 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 325 IPR044676 GO:0003700|GO:0006355|GO:0043565
Ahy4g0789 332 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Ahy4g0789 332 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Ahy4g0789 332 Pfam Myb-like DNA-binding domain 76 119 IPR001005 -
Ahy4g0789 332 MobiDBLite consensus disorder prediction 1 22 - -
Ahy4g0789 332 PANTHER MYB TRANSCRIPTION FACTOR 1 325 - -
Ahy4g0789 332 CDD SANT 25 70 IPR001005 -
Ahy4g0789 332 SUPERFAMILY Homeodomain-like 20 117 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0789 Ahy-Chr4 12073720 12075960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g0789 19 219 MYB Transcription Factor Family AT1G48000 59.701 3.20e-85 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy4g0789 Myb_DNA-binding 3.40E-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0789 K09422 - gmx:100805341 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g0878 14 13783332 13786932 Ahy4g0789 4 12073720 12075960 hybridization