Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0654 ATGACTTCCACCCATGACGTTACAGATAATGAAGCTGGTGAGAAAGAGCAGTCAGAATCACAGATGCAATCTTTATCTGCAAATGGAATTTCTGATCCAGGTGCTGGTATGCAGAATAATCAGTATGTAACACCTGCACCACTTGGAACTGGGTATGCTATGGCGCCCCCTCCTTATCCATATCCAGATCCTTACTACAGAAGCATGTTTGCTCCGAATGATACACAGCCATATCCCCCGCAGCCATATGGTGGACATCCAATGGCCCATATTCAGTTAATGGGAACTCAGCAAGCTGGTGTTCCTTTGCCGACTAATGCAATTGAGGAGCCTGTGTTTGTAAATGCAAAGCAGTATCACGGTATCTTAAGACGTAGGCAATCCCGTGCTAAAGCTGAATCCGAAAATAAGGCTATCAGGAATCGCAAGCCATACCTGCATGAATCTCGACATCAGCATGCACTTCGACGAGCAAGAGGATGTGGAGGTCGATTTCTGAACTCGAAGAAAGATGAGAATCAACAGGATGAGCTGTCACCTGCTGACAAATCACACTCAAACGACAATCACAATCCTGACAAAAACAATCTTGCACCATCAGATAGAGCATCCTAA 615 0.452 MTSTHDVTDNEAGEKEQSESQMQSLSANGISDPGAGMQNNQYVTPAPLGTGYAMAPPPYPYPDPYYRSMFAPNDTQPYPPQPYGGHPMAHIQLMGTQQAGVPLPTNAIEEPVFVNAKQYHGILRRRQSRAKAESENKAIRNRKPYLHESRHQHALRRARGCGGRFLNSKKDENQQDELSPADKSHSNDNHNPDKNNLAPSDRAS* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0654 204 MobiDBLite consensus disorder prediction 17 46 - -
Ahy4g0654 204 MobiDBLite consensus disorder prediction 1 57 - -
Ahy4g0654 204 Gene3D - 108 169 - -
Ahy4g0654 204 MobiDBLite consensus disorder prediction 164 190 - -
Ahy4g0654 204 ProSitePatterns NF-YA/HAP2 subunit signature. 113 133 IPR018362 GO:0003677|GO:0016602
Ahy4g0654 204 PRINTS CCAAT-binding transcription factor subunit B signature 111 133 IPR001289 GO:0003700|GO:0006355
Ahy4g0654 204 PRINTS CCAAT-binding transcription factor subunit B signature 142 165 IPR001289 GO:0003700|GO:0006355
Ahy4g0654 204 MobiDBLite consensus disorder prediction 128 204 - -
Ahy4g0654 204 MobiDBLite consensus disorder prediction 128 145 - -
Ahy4g0654 204 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 110 165 IPR001289 GO:0003700|GO:0006355
Ahy4g0654 204 SMART cbf3 107 168 IPR001289 GO:0003700|GO:0006355
Ahy4g0654 204 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 2 186 IPR001289 GO:0003700|GO:0006355
Ahy4g0654 204 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 2 186 - -
Ahy4g0654 204 ProSiteProfiles NF-YA/HAP2 family profile. 108 168 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0654 Ahy-Chr4 9362683 9366474 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g0654 2 184 CCAAT-HAP2 Transcription Factor Family AT1G30500 53.968 1.56e-63 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Ahy4g0654 CBFB_NFYA 4.80E-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0654 K08064 - gmx:100809036 320.472