Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0620 ATGCTTGAATTTCTTGACCTCTCTGGAAATTCATTTTTCGGTGAAATTCCATCAAGTTTGCATCAATGTAGGAAGCTCAAATTTCTGAATATGGACAACAATAGAATTTACGGACACCTACCAAGTGATATCGGCAACTTATCTATGCTTCAAACCTTAAGTCTTAACAACAACAATTTAACAGGTTCACTTCCTCAGTCTCTTTTCAACATCTCCACTCTAAGACTAATAAACCTTCGGAACAACTTCTTTGGTGGTCAACTTCCTGAAGAGATGTGTGATCAAGCTCATTCCTTACAACACATTTCTATATTAAATAACAATGTTGGTGGCACCATTCCAAAGTCTATTGGCAACTGCACCTCATTAGTAAACTTATATCTCGGAGCAAACTTTTTCACAGGTACAATACCCTATGAGATAGGTGACAAATTAAGAAAGCTTGAGATATTGCACTTACAAGGCAACAAACTAACAGGATCAATCCCTCCAAACATCTTCAACATCTCAGGACTACAAAGCCTCTCACTCTCAAACAACAATCTATCAGGAAATCTTCCAATTCAAGCACATCACACCCTCTCCAATCTCCAATTCCTCTACATTTCTGGGACCAACCTTAGTGGAGAAATTCCAACACCTCTTTTCAATGCTTCAATGCTACTTGAGCTAGTACTTGCCAACAGTTCCTTTTCAGGACCTATACCTGATTCATTTGGCAACTTGAGAAATCTCCAGGTCCTATATCTCTTGGGAAACAACTTCACTGGTGGTCTTGGTTTCCTCAATTCACTCACACAATGCAGGCAATTGACAAAGATTCTTTTAGCATTTAATCCCCTTGGTGGAACACTTCCAAATGCCATTGGAAATCTTTCACAATCTCTTCAAAGGTTTGATGTGAGGAGTTGTAACATCAAGGGTGAAATTCCTCCACAGATTGGAAACTTGAAGAACCTATATGATTTAAAGATGTATAACAACCAATTTATTGGAGAGATTCCAAGCACAATTGGGAACTTACAGCTTCTTCAATTATTGGACCTTTCGAACAATAGGCTAAATAGCTCTATCCCAGAACAAATTTGCAGGATTCAGAGTTTGAACCAGTTGATTCTTAGCAATAACAACATTTTTGGGCCAATTCCAAGATGTGTGGATCATCTTTCTTCTCTAAGAATACTTTACTTAGATTCCAACAATCTAAACTCCACTATACCTTCCACACTTGGGAGCCTCAGTGATATCTTGGAGGTAAATTTATCCACCAATGGCCTTGAAGGGTCTTTGCCAGCTGAGATAAGTAGCATGAATGCTGTGATCAATTTGGATATTTCATATAACAAGCTTTCAGGAAAAATTCCCACCGGAATTGGTAGCTTGCAAAGAATATTGAATCTCTCATTAGCCTATAACATGTTACAAGGGCCTATTCCTGATTCAATTGGGAACATGTTGAGTTTGGAATTTCTTGATTTTTCCCATAATCTTTTATCAGGAACCATTCCTAAGTCCTTTGTGAACATTGTTGATCTCAAGTTTATAAACTTGTCTTATAATAGGCTATATGGTGAGATTCCTTATGGTGGCAAGTTTATAAATTTCAAACCTCAATCATTCATGATGAATGATGGACTCTGTGGAAGACCAAATTTTGGAGTCCCACCATGTTCCAATGATAGTGCAAAAAACAGTAGGAGATCCAAAGCTCTGAAATTGGCAATACCCTTAATTGTATTATGCATGATTCTTGCATGTGCAGTTATTCTGATTTACAGAAGAAAACTAAGAAAGGGTTCAGTTGCTGAAGACTTACCATCGTTTCGATTTCCAAGTCGAATTTCCTACTTTGAACTCATGGAGGCAACACAGAAATTTGATGAGAGCAATCTTATTGGAAGAGGGGGTTTAGGTTCTGTTTTTAGAGGTGAGCTTTCAAATGGAACTGTGGTTGCTGTTAAAGTATTCAACTTGGAGATACAACAAGCACCAAGAAGCTTTGATGCAGAATGCGAAGCGATGCGAAATCTTCGCCATAGAAATCTTGTTAAAGTCATCAGCAGTTGCTCAAATTCCATTGATTTCAAGGCCTTGGTGATGGAATTTGTAGCAAATGGGAACTTGGAGCAGTGGTTGTATTCTCATAACTATTGCCTACCATTCATGCAAAGGTTGAAGGTAGTAATAGATGTTGCATGTGCATTGGAGTATCTGCACCATGGTAACACTAGACCTGTGGTGCATTGTGATTTGAAGCCAAGTAATGTTCTTTTAGATGAAGATATGGTTGCACATGTTTGTGATTTCAACATTGCTAAACTATTGGAAGAAGGTCAATCTGAAATCCATACAAACACCTTAGCCACCCTTGGTTATATGGCTCCAGAGTATGGATTGGAAGGAGTAGTGTCCCTAAAGGGAGATGTGTACAGCTATGGTATTTTGCTAATGGAAGTGTTCACAAGAAAGAAACCAACTGATGAAATGTTTTGTGAGGGACTAAGCTTAAGGTCATGGATCCAACAGTCATTGCCACGTGGGATAACTGAGGTTGTGGATCCTAATTTGATGGAGGGAGAGGAACAAGTTGTTTCTGCCATGGAAGTAGCCTTATCAAAAATCATGGACTTGGCTCTGGATTGCTCTCATGACTCTCCAAATGAGAGAATTAGTATGAAGGAGGTCTTTGTTCTGCTAAGCAAAATCAAAACCACATTTCAGCAGAGATGA 2730 0.3861 MLEFLDLSGNSFFGEIPSSLHQCRKLKFLNMDNNRIYGHLPSDIGNLSMLQTLSLNNNNLTGSLPQSLFNISTLRLINLRNNFFGGQLPEEMCDQAHSLQHISILNNNVGGTIPKSIGNCTSLVNLYLGANFFTGTIPYEIGDKLRKLEILHLQGNKLTGSIPPNIFNISGLQSLSLSNNNLSGNLPIQAHHTLSNLQFLYISGTNLSGEIPTPLFNASMLLELVLANSSFSGPIPDSFGNLRNLQVLYLLGNNFTGGLGFLNSLTQCRQLTKILLAFNPLGGTLPNAIGNLSQSLQRFDVRSCNIKGEIPPQIGNLKNLYDLKMYNNQFIGEIPSTIGNLQLLQLLDLSNNRLNSSIPEQICRIQSLNQLILSNNNIFGPIPRCVDHLSSLRILYLDSNNLNSTIPSTLGSLSDILEVNLSTNGLEGSLPAEISSMNAVINLDISYNKLSGKIPTGIGSLQRILNLSLAYNMLQGPIPDSIGNMLSLEFLDFSHNLLSGTIPKSFVNIVDLKFINLSYNRLYGEIPYGGKFINFKPQSFMMNDGLCGRPNFGVPPCSNDSAKNSRRSKALKLAIPLIVLCMILACAVILIYRRKLRKGSVAEDLPSFRFPSRISYFELMEATQKFDESNLIGRGGLGSVFRGELSNGTVVAVKVFNLEIQQAPRSFDAECEAMRNLRHRNLVKVISSCSNSIDFKALVMEFVANGNLEQWLYSHNYCLPFMQRLKVVIDVACALEYLHHGNTRPVVHCDLKPSNVLLDEDMVAHVCDFNIAKLLEEGQSEIHTNTLATLGYMAPEYGLEGVVSLKGDVYSYGILLMEVFTRKKPTDEMFCEGLSLRSWIQQSLPRGITEVVDPNLMEGEEQVVSAMEVALSKIMDLALDCSHDSPNERISMKEVFVLLSKIKTTFQQR* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0620 909 Gene3D Ribonuclease Inhibitor 1 260 IPR032675 -
Ahy4g0620 909 Gene3D Ribonuclease Inhibitor 261 566 IPR032675 -
Ahy4g0620 909 Gene3D Phosphorylase Kinase; domain 1 609 702 - -
Ahy4g0620 909 Pfam Leucine rich repeat 146 207 IPR001611 GO:0005515
Ahy4g0620 909 Gene3D Transferase(Phosphotransferase) domain 1 703 909 - -
Ahy4g0620 909 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 2 138 - -
Ahy4g0620 909 Pfam Leucine Rich Repeat 2 23 IPR001611 GO:0005515
Ahy4g0620 909 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 2 138 - -
Ahy4g0620 909 CDD STKc_IRAK 632 902 - -
Ahy4g0620 909 SUPERFAMILY Protein kinase-like (PK-like) 605 903 IPR011009 -
Ahy4g0620 909 SUPERFAMILY RNI-like 192 528 - -
Ahy4g0620 909 ProSiteProfiles Protein kinase domain profile. 626 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy4g0620 909 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 95 907 - -
Ahy4g0620 909 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 95 907 - -
Ahy4g0620 909 SMART serkin_6 626 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy4g0620 909 ProSitePatterns Serine/Threonine protein kinases active-site signature. 746 758 IPR008271 GO:0004672|GO:0006468
Ahy4g0620 909 Pfam Protein tyrosine and serine/threonine kinase 630 896 IPR001245 GO:0004672|GO:0006468
Ahy4g0620 909 SMART LRR_typ_2 47 71 IPR003591 -
Ahy4g0620 909 SMART LRR_typ_2 341 365 IPR003591 -
Ahy4g0620 909 SMART LRR_typ_2 485 508 IPR003591 -
Ahy4g0620 909 SMART LRR_typ_2 194 218 IPR003591 -
Ahy4g0620 909 SMART LRR_typ_2 145 169 IPR003591 -
Ahy4g0620 909 SMART LRR_typ_2 389 413 IPR003591 -
Ahy4g0620 909 SUPERFAMILY L domain-like 2 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0620 Ahy-Chr4 8449184 8453294 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g0620 14 906 Receptor kinase-like Gene Family AT3G47570 37.352 1.10e-174 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Ahy4g0620 PK_Tyr_Ser-Thr 8.20E-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0620 - K13420 lja:Lj6g3v0938090.1 1057.36