Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0485 ATGGAAATGGACCCTGGCAGTGGCAAGCTTTTCATTGGAGGGATTTCATGGGACACAAATGAAGACCGACTCAGACAATATTTCCAGGGGTTTGGTGATGTCGTGGAAGCCGTGATCATGAAGGATCGGACCACCGGGCGTGCCCGTGGCTTCGGCTTTGTTGTTTTTGCTGATGCTTCTGTTGCTGAACGAGTTGTTATGGAGAAACATGTCATTGATGGAAGAACTGTTGAAGCAAAAAAAGCTGTCCCCAGAGATGACCAGAATGTTTTGAACAAAAGCAACAGCAGTAATCACAGTTCACCTGGTCCTACTCCATCCCGTACGAAGAAGATATTTGTCGGAGGTCTAGCATCCACGGTTACTGAGAGCGACTTCAAGAAGTACTTTGATCAATTTGGAACAATTACAGACGTGGTTGTGATGTATGATCATAACACCCAAAGGCCCAGAGGTTTTGGATTCATCACCTATGATTCGGAGGAAGCAGTTGAGAAAGTTCTATACAAATCTTTCCATGAATTGAATGGTAAAATGGTTGAGGTTAAGAGGGCTGTACCAAAGGAATTATCTCCAAGTCCAAGCAGAGGCCAGTTAGGTGGATATAGTTATGGTCTTAGTAGAGTTAGTAGCTGCCCCAATGGTTTCATTCAGGGATTTAATGCAAGTGTAGTTGGAAGGAATGGACTTAAATTAGATGGAAGATCGAATGCTGTTACTGCTGGCCATAGTGAATATCCTCTTTTCGGCCATAGTTATGGAACAGGACTCAACTTTGAGCCACCATTGACCCAAAATGGAACTTCAAACTTTACTTCTACCTTCATAGGGCGAACAATGAACTCTTCGTTCGGTGGTAGTCCAAGCAGGTACAGCAATGCCATAGGTTATGCTGGTGCAAATGTAGGCAATAATTCGGCCATGAGTTCTACAAGTCAGAACTTGTGGGGAAATGGGAATCTTAACTATGCATCTAACCTTACAAATTCTGATTCTCTTTCTGGTTATCGGAACGAAAATTCAAGCATGGCTTCTTTTGGTAGTATAGGACCACTTTGGAGTTCCTCCCTTGGAACAGATCAAACTGGAATTATCGGCTCCGGATATGGTAAGGGCAGTCTAAGTAGCTCTGGAGATGTGAATTTAGGGTCGAAAACAGTAGGTTATGGAAAAAATAGCGATAACATTGTTACGTCAGGTTCTTCATATTCCTTACCAAATGCCAGTTATGATGAGTCATACAATGTTGCTTATGATGCTGGGTCATTTTACGGGGACAGTATGTGGAGAACATCCCCTTCAGAATTAGAGGATTCCGGCTCTCTTGGCTTTGGCATTGACCATGCTGTTTCAGGCTTAATGCGCAAAAGCTCTGGCAGTCACATTGGAGCTTATGCTGTTGCCAACACTCAACCAAATAGAGGAATTGTTGCCTAG 1437 0.4342 MEMDPGSGKLFIGGISWDTNEDRLRQYFQGFGDVVEAVIMKDRTTGRARGFGFVVFADASVAERVVMEKHVIDGRTVEAKKAVPRDDQNVLNKSNSSNHSSPGPTPSRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLYKSFHELNGKMVEVKRAVPKELSPSPSRGQLGGYSYGLSRVSSCPNGFIQGFNASVVGRNGLKLDGRSNAVTAGHSEYPLFGHSYGTGLNFEPPLTQNGTSNFTSTFIGRTMNSSFGGSPSRYSNAIGYAGANVGNNSAMSSTSQNLWGNGNLNYASNLTNSDSLSGYRNENSSMASFGSIGPLWSSSLGTDQTGIIGSGYGKGSLSSSGDVNLGSKTVGYGKNSDNIVTSGSSYSLPNASYDESYNVAYDAGSFYGDSMWRTSPSELEDSGSLGFGIDHAVSGLMRKSSGSHIGAYAVANTQPNRGIVA* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0485 478 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 478 - -
Ahy4g0485 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 177 IPR000504 GO:0003723
Ahy4g0485 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 76 IPR000504 GO:0003723
Ahy4g0485 478 Gene3D - 89 205 IPR012677 -
Ahy4g0485 478 CDD RRM1_hnRNPA_hnRNPD_like 10 80 - -
Ahy4g0485 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 187 IPR000504 GO:0003723
Ahy4g0485 478 CDD RRM2_DAZAP1 108 187 IPR034131 GO:0003723
Ahy4g0485 478 MobiDBLite consensus disorder prediction 88 107 - -
Ahy4g0485 478 SUPERFAMILY RNA-binding domain, RBD 100 206 IPR035979 GO:0003676
Ahy4g0485 478 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 478 - -
Ahy4g0485 478 Gene3D - 7 88 IPR012677 -
Ahy4g0485 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 84 IPR000504 GO:0003723
Ahy4g0485 478 SMART rrm1_1 9 80 IPR000504 GO:0003723
Ahy4g0485 478 SMART rrm1_1 111 183 IPR000504 GO:0003723
Ahy4g0485 478 SUPERFAMILY RNA-binding domain, RBD 4 100 IPR035979 GO:0003676
Ahy4g0485 478 MobiDBLite consensus disorder prediction 83 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0485 Ahy-Chr4 6337696 6345551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g0485 10 189 Eukaryotic Initiation Factors Gene Family AT2G36660 28.723 2.10e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0485 K14411 - tcc:18597296 588.186