Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0470 ATGCCCATCACTCAAACCACGACTGCAGATAGTGTTTTCCAACTCCAACGCGCCAACCACTCCTCCAAGCGGAAGCTCGATGACTACGGTGATGAATATGGGGCAGATGCCGGCGCGGATTTCGCCGGCGGCGACCCCGAGGTCGCCTATGCAGCGGGATTCCTTGCCGGGATTAAGCGAGAAGAGACGAAAAACGCCTCAAATTCGCGGTACCGTGGCGCGGATGCTAGGGTTTCGTCGTCGACTCCTTCTTCGTCGCGAGCCGCTCAGTATCGGAGCGGGTCGAGGTCCGGGTCGCGGTTACAGTTCTTCGTCCGAATGATGTCGCGAGGGAACACTGTGGTGATGCAAGCATCTCCTCACGATACCGTGAAATCGATCCACGAGAGAATCATGGTATTGACCGGTATACCTGTTTTCGAGCAGGGTTTAACATACAGAGGCAAACAACTCCAGTGGGAGAACACTCTTCAAGAGTGTGGGGTTCAGAACGACGCAAACCTCCACCTGGTTGGTCGCATGAGGAGTACGGAGCACCCTCAGGCGTGGCAGGTTCTTGAAAACATGGTCAGTCTTGTTTTCAGGCTCTGTAGAGGCGAAATTGTTCACGAGGCTACCAAGGTGATCAAGAGCCTCATCACCAGTTACATGAACATGGCGCCCAAGGTTGATGATGCTACAGCATCTTATTTCCACATTTTCATCGCCTCGAATGCCCCTTCCATGCTGGTAACTCTTTATGTTTCTCCTTATGCTGGTAACAAGGAACGTGGTGATTTATTTGTCAGGCATTTCTTGAATTCTTGTCGCAATAACATGGCTAAACCTTATCACGGTCAGTGTGCGAGTGTGGTGTTGGAGTTGTGTAGTTTGCTTATGAGGGTTGGGTGTGATGATCCTCTGTATCTGCATTGCCGGAATACTTTGGGGTCTATGTTAGAGAGTGCTGGTTGTTGCCATGTTTATGCAGGTAAGCATGGTAAAGGTGGAGGGTCTATTTTGTTGCAGGATATCTGCCCCTTTGTTCGTGAGCTTTCGAATAGGTTGTTGAGGGATTTGGAGTTATGCATCCAGCGCCCCAACAGTTCGGGGCCATTGCAGACCGATGTTTCGGACTTTGCAGCTTTCTTGACCCCTTTGAGGAAAGGAATTACCCAATTGCAAGCTATGAGGGGTATGGGGTTGGATGAAAAGTGCCATGAGGGGATCTTGCTTGCAGAAGAAGTGGATTACCTTCACCTTATATTTATTCAAATGTTGGAGAAAATGGAACAATGCCTTCGTTCTATGCAGGAATTCTTGTCTGACAAACTAAGACGGGATCGGGATGTGGGTTTGACGTATTCTGGATGTTCTCAATATCTTTCTATCTTGAAGGAATTGTATCAAATCTCCAAGCTATATGATGGGGCGGAGGAAAAATTTTGGAAGGTTTTGATGAATCAACGAAGTATGCTTTGTATACTTGTCATCCAATATGCAAAGAGAAGTGATGATCACCAGTGGATTCTTGATCACAGATCTGTGACTAATTTTGAGGTGAGGAGGCATCTGGCAATGCTGTTGTTTCCTGATGTCAAAGAAGACTATGAGGAGTTACATGAGATGCTTATTGATAGGTCTCAATTATTGGCCGAATCCTACGAGTATATAGCACAAGCAAAGCCTGCATCTCTGCATGCTGGGCTATTTATGGAATTCAAAAACGAGGAAGCTACTGGACCGGGTGTGCTGAGGGAATGGTTTCTTTTGGTGTGTCAAGCAATATTTAATCCAGAAAATGCTCTTTTTGTAGCATGCCCAAATGATTGCAGGAGATTTTACCCTAATCCTGCATCTAAGGTAGATCCTCTGCATCTAAAGTACTTCAGTTTTGCTGGTCGTGTTATTGCATTAGCTTTAATGCATAAGGTGCAAGTGGGTATTGTTTTTGACCGTTTGTTTTTCAAGCAATTGGCTGGAAAGTGTGTTACTTTAGAAGATATACAGGCGGCAGATCCTTACTTGTACAGTAGCTGCAAGCAAATATTGGAGATGGATGCTGATTTCATTGATTCAGATGCTTTAGGACTGACGTTTGTGAGAGAGGTGGATGAATTAGGACACAGGAAAGTGGTTGAACTTTGCTCTGGTGGGAAAAACCTTGTAGTGAATAGTAAGAACAGGGAGAAGTATGTTTCTCTTCTCATTCAAAATTATTTTGAGACATCAATTTCTGAGCAGGTATCACATTTTGCCAAGGGTTTTGGTGATATCCTTTCTAACTCAAGGCAACAGCCGTTCTTCTTTAAAAGTTTAGAGCTTGAAGACCTTGATTGGATGCTCCATGGGAGCGAAAGTACTATTTCTGTCGAAGATTGGAAGGCGCATACTGAGTATAATGGCTATAAAGAGACTGACTGTCAAATATCATGGTTTTGGGAGATTGTTGGTAGAATGCCAGCAGAACAACGGAAGATACTTCTGTTCTTTTGGACATCCGTGAAATATCTGCCAGTTGAAGGTTTCCGCGGTTTAGCTTCCCGTCTATACATTTACAGGTCTATGGAAACTGAAGACCGCCTTCCTTCATCGCACACATGCTTTTACAGGCTGTGTTTCCCGCCATATTCATCCAAGGCTGTCATGCAAGATCGCCTTAGAATCATCACTCAAGAACACATCGGTTGCAGTTTCGGTACCTGGTGA 2688 0.4542 MPITQTTTADSVFQLQRANHSSKRKLDDYGDEYGADAGADFAGGDPEVAYAAGFLAGIKREETKNASNSRYRGADARVSSSTPSSSRAAQYRSGSRSGSRLQFFVRMMSRGNTVVMQASPHDTVKSIHERIMVLTGIPVFEQGLTYRGKQLQWENTLQECGVQNDANLHLVGRMRSTEHPQAWQVLENMVSLVFRLCRGEIVHEATKVIKSLITSYMNMAPKVDDATASYFHIFIASNAPSMLVTLYVSPYAGNKERGDLFVRHFLNSCRNNMAKPYHGQCASVVLELCSLLMRVGCDDPLYLHCRNTLGSMLESAGCCHVYAGKHGKGGGSILLQDICPFVRELSNRLLRDLELCIQRPNSSGPLQTDVSDFAAFLTPLRKGITQLQAMRGMGLDEKCHEGILLAEEVDYLHLIFIQMLEKMEQCLRSMQEFLSDKLRRDRDVGLTYSGCSQYLSILKELYQISKLYDGAEEKFWKVLMNQRSMLCILVIQYAKRSDDHQWILDHRSVTNFEVRRHLAMLLFPDVKEDYEELHEMLIDRSQLLAESYEYIAQAKPASLHAGLFMEFKNEEATGPGVLREWFLLVCQAIFNPENALFVACPNDCRRFYPNPASKVDPLHLKYFSFAGRVIALALMHKVQVGIVFDRLFFKQLAGKCVTLEDIQAADPYLYSSCKQILEMDADFIDSDALGLTFVREVDELGHRKVVELCSGGKNLVVNSKNREKYVSLLIQNYFETSISEQVSHFAKGFGDILSNSRQQPFFFKSLELEDLDWMLHGSESTISVEDWKAHTEYNGYKETDCQISWFWEIVGRMPAEQRKILLFFWTSVKYLPVEGFRGLASRLYIYRSMETEDRLPSSHTCFYRLCFPPYSSKAVMQDRLRIITQEHIGCSFGTW* 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0470 895 MobiDBLite consensus disorder prediction 65 94 - -
Ahy4g0470 895 CDD HECTc 534 893 IPR000569 GO:0004842
Ahy4g0470 895 ProSiteProfiles Ubiquitin domain profile. 101 177 IPR000626 GO:0005515
Ahy4g0470 895 Pfam HECT-domain (ubiquitin-transferase) 584 887 IPR000569 GO:0004842
Ahy4g0470 895 SUPERFAMILY Ubiquitin-like 102 189 IPR029071 -
Ahy4g0470 895 Gene3D Hect, E3 ligase catalytic domains 537 767 - -
Ahy4g0470 895 SUPERFAMILY Hect, E3 ligase catalytic domain 530 882 IPR035983 GO:0004842
Ahy4g0470 895 MobiDBLite consensus disorder prediction 69 94 - -
Ahy4g0470 895 Gene3D Hect, E3 ligase catalytic domain 779 894 - -
Ahy4g0470 895 Gene3D - 95 192 - -
Ahy4g0470 895 Gene3D Hect, E3 ligase catalytic domain 655 737 - -
Ahy4g0470 895 ProSiteProfiles HECT domain profile. 555 895 IPR000569 GO:0004842
Ahy4g0470 895 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 86 893 - -
Ahy4g0470 895 PRINTS Ubiquitin signature 112 132 IPR019956 -
Ahy4g0470 895 PRINTS Ubiquitin signature 154 175 IPR019956 -
Ahy4g0470 895 PRINTS Ubiquitin signature 133 153 IPR019956 -
Ahy4g0470 895 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 86 893 - -
Ahy4g0470 895 Pfam Ubiquitin family 104 175 IPR000626 GO:0005515
Ahy4g0470 895 SMART hect_3 553 893 IPR000569 GO:0004842
Ahy4g0470 895 SMART ubq_7 101 173 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0470 Ahy-Chr4 5986026 5991465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g0470 101 175 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 34.667 5.95e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0470 - - aip:107638691 1774.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g0543 14 7197670 7204508 Ahy4g0470 4 5986026 5991465 hybridization
Ahy11g2294 11 136639199 136642574 Ahy4g0470 4 5986026 5991465 PCT