Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0430 ATGAGTCAACTCGGCGATATTCTTCAGACGGAGCCAAGGACGATTCTCGGATTGTTGACGGAGCAAATGGACGCCGCCGCCGATGGACCGCCACGCACCAGGACCAGGCGCACCTTCAAGGACCGTTTAGGATTCATCGGCATCGGCTGTTGCGGTGCCACGTGGCGATTCCGTTCTGAGTCCATAACGGTCAGGCACGAAGACCAAGAACAACAGCAACAACCACAGCAACAGCGTCAACAGCACCAACCGCTTCTTCTTGAAACGAATCAGGCTCGAGATCCGAACCGTTTTGGACCTGACTGCGTGTCTCCGACTCCTGCCAGTTCCGGTATGAATCTTGCGGCGGCGTTAGCGGCTGAGCGGCAGCTCCGGGGGACGCCGCAGGAGGCGGAGGGAGGTGAGAGAAGAGGTGCGCCGAGGACGCCGTGGAGGGTGTCGCTGATGAGGCTGCTAGAGGAGACCGACGGCGGCGATGCAGAGGTTAGTTCGGCGGCGAAGACATCGGATGAAGATAAGATAAGTGGTGGTGTGGGAAATGATTGGGTGTGCTGCGTGTGCATGGGGAGGAAGAAAGGCGCGGCGTTCATACCATGTGGTCACACTTTTTGCAGGGTTTGTTCAAGGGAGCTGTGGCTCAACCGAGGCTCTTGTCCCCTTTGCAATCGTTCCATTCTCGAGATTCTCGACATTTTCTGA 699 0.5737 MSQLGDILQTEPRTILGLLTEQMDAAADGPPRTRTRRTFKDRLGFIGIGCCGATWRFRSESITVRHEDQEQQQQPQQQRQQHQPLLLETNQARDPNRFGPDCVSPTPASSGMNLAAALAAERQLRGTPQEAEGGERRGAPRTPWRVSLMRLLEETDGGDAEVSSAAKTSDEDKISGGVGNDWVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0430 232 MobiDBLite consensus disorder prediction 68 83 - -
Ahy4g0430 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 231 IPR013083 -
Ahy4g0430 232 CDD RING-HC 184 221 - -
Ahy4g0430 232 Pfam Zinc finger, C3HC4 type (RING finger) 183 226 - -
Ahy4g0430 232 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 13 232 - -
Ahy4g0430 232 MobiDBLite consensus disorder prediction 90 110 - -
Ahy4g0430 232 SMART ring_2 184 221 IPR001841 -
Ahy4g0430 232 PANTHER OS01G0917900 PROTEIN 13 232 - -
Ahy4g0430 232 SUPERFAMILY RING/U-box 179 229 - -
Ahy4g0430 232 MobiDBLite consensus disorder prediction 64 83 - -
Ahy4g0430 232 ProSiteProfiles Zinc finger RING-type profile. 184 222 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0430 Ahy-Chr4 5456039 5456737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g0430 15 232 C3H Transcription Factor Family AT4G22250 50.222 6.04e-60 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0430 - - aip:107638663 422.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g0512 14 6824321 6825763 Ahy4g0430 4 5456039 5456737 hybridization
Ahy11g2314 11 137032784 137033873 Ahy4g0430 4 5456039 5456737 PCT