Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0418 ATGGAAGCTGAGGGTGGTAGCTCTAATGGTGGCCCTTCTTCTAATTGTTTCATGGCTTTTGGAGAAAACAACAACAACAGTAGTAGTAATAATAACAATAACAGTGTTAGTGGTAGTGGCCTATCTCCAATGATGATGATGCCTTTACTCACTACTAATTCCCATCATCCAACAAATAATCTTATTCCTCATCAAAATCATACTTCTACTTCTAATAACATTGCAAACATCTTCCTTCCCAACAACACCAACAATAGTAATACCAACACTTCTTTCATGCTTGAAAACAATACTACTACTACTACTACTGGTTTAGGATATTATTTCATGGACAACAACAATGGAAGCTCTTCTTCCTCTTCTCCTTCTTCTGCTGTCAAGGCAAAGATCATGGCCCATCCTCACTATCACCGCCTCTTGGCAGCTTACGTCAATTGTCAAAAGGTTGGAGCACCACCTGAAGTGGTGGCAAGGTTAGAAGCAGCATGTGCATCTGCCATGTCAATGGCAGCTGCAGGAGACACATCAGCTTGCCTAGGTGAAGATCCATCTCTGGATCAGTTCATGGAAGCTTACTGTGAGATGCTCACAAAGTACGAGCAAGAACTTTCAAAACCCTTGAAGGAAGCCATGATCTTCCTTCAAAGGATGGAGTCTCAGTTCAAGAATCTCACCATCTCTTCTTCTTCTAGAGATCTTGGTAGCAACGAGGGAAATGATGGGAATAATGGATCATCTGAAGAAGATGCAGATCTACAAAGCTTGATAGATCCTCAGGCAGAAGACAGGGAATTGAAGGGTCAGCTTCTTCGCAAGTACAGTGGCTACTTGGGAAGTCTGAAGCAGGAGTTCATGAAGAAGAGGAAGAAAGGGAAGCTTCCCAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAGCAGACATTACAAATGGCCTTACCCTTCTGAATCACAGAAGCTGGCTCTAGCAGAATCCACTGGTTTGGATCAGAAGCAAATTAACAATTGGTTTATTAATCAGAGGAAACGCCACTGGAAGCCTTCTGAGGACATGCAATTTGTGGTGGTGGATCCAACTCATCCACATTATTACATGGATAATGTTCTTGCCAATCCATTTTCCATGGATCTCCCCAACACAATGCTCTAG 1149 0.4247 MEAEGGSSNGGPSSNCFMAFGENNNNSSSNNNNNSVSGSGLSPMMMMPLLTTNSHHPTNNLIPHQNHTSTSNNIANIFLPNNTNNSNTNTSFMLENNTTTTTTGLGYYFMDNNNGSSSSSSPSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEAACASAMSMAAAGDTSACLGEDPSLDQFMEAYCEMLTKYEQELSKPLKEAMIFLQRMESQFKNLTISSSSRDLGSNEGNDGNNGSSEEDADLQSLIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPTHPHYYMDNVLANPFSMDLPNTML* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0418 382 SMART ELK_2 264 285 IPR005539 GO:0003677
Ahy4g0418 382 SMART KNOX2_2 175 226 IPR005541 GO:0003677|GO:0005634
Ahy4g0418 382 CDD homeodomain 296 348 IPR001356 GO:0003677
Ahy4g0418 382 ProSiteProfiles 'Homeobox' domain profile. 284 347 IPR001356 GO:0003677
Ahy4g0418 382 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 5 371 - -
Ahy4g0418 382 MobiDBLite consensus disorder prediction 228 250 - -
Ahy4g0418 382 Pfam KNOX1 domain 125 164 IPR005540 GO:0003677|GO:0005634
Ahy4g0418 382 ProSitePatterns 'Homeobox' domain signature. 322 345 IPR017970 GO:0000981|GO:0006355
Ahy4g0418 382 MobiDBLite consensus disorder prediction 7 46 - -
Ahy4g0418 382 Pfam Homeobox KN domain 304 343 IPR008422 GO:0003677|GO:0006355
Ahy4g0418 382 MobiDBLite consensus disorder prediction 1 46 - -
Ahy4g0418 382 Pfam ELK domain 264 285 IPR005539 GO:0003677
Ahy4g0418 382 Pfam KNOX2 domain 179 225 IPR005541 GO:0003677|GO:0005634
Ahy4g0418 382 Gene3D - 289 351 - -
Ahy4g0418 382 PANTHER - 5 371 - -
Ahy4g0418 382 SUPERFAMILY Homeodomain-like 286 361 IPR009057 -
Ahy4g0418 382 ProSiteProfiles ELK domain profile. 264 284 IPR005539 GO:0003677
Ahy4g0418 382 SMART KNOX1_2 124 168 IPR005540 GO:0003677|GO:0005634
Ahy4g0418 382 SMART HOX_1 286 351 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0418 Ahy-Chr4 5315259 5319977 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g0418 126 382 Homeobox Transcription Factor Family AT1G62360 80.153 2.45e-135 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Ahy4g0418 KNOX2 3.10E-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0418 - - gmx:100805837 483.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g0500 14 6665561 6670574 Ahy4g0418 4 5315259 5319977 hybridization
Ahy11g2319 11 137189255 137192646 Ahy4g0418 4 5315259 5319977 PCT
Ahy1g2538 1 103886561 103890850 Ahy4g0418 4 5315259 5319977 PCT