LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy4g0404	ATGGACTACTACTGGACTAGAGGTCACACCCTCGGCCGGGGATCCACAGCCACCGTCTACACCGCTGAATTTCATGGGTTTGGTGAACTCTTTGCCGTGAAGTCAGCGGAGGTACACCGGTCTGAGGAGCTGCGGAAGGAACAGGGTCTTCTTTCATCGCTCAATTGTCCTCAGATTGTCAAGTACAAAGGGTACGATGTTACGTACGAGGATGGTCGGTACTTTTACAACCTCTTCTTGGAATACGCGCCAAGGGGGACCCTGCTTGACGTAATTGCCCATTACAATCACGGCGGTGCCACCATGGAACACTCATTGGCAAGTGTCTACACGCGCCAGATTCTGTTGGGACTCAACTATCTTCATTCCAATGGGATAGTACATTGCGATGTAAAAGGGCAGAACGTTCTCATCACCCAACATGGCGCCAAAATCGCCGACTTTGGTTGTGCCCGCAAAGTTGGCTCCGGCGCCGGCGGACGAGGAGGGGTTATCGCTGGAACGCCGGCGTTCATGGCGCCGGAGGTGGCGCGTGGGGATGAACAGGGATTCCCAGCTGACGTGTGGGCCCTGGGATGCACCATTCTTGAGATGGTTACCGGGAAACCGCCGTGGAAAGACGTTTCCGGCGACCCTGTTTCGGTGCTTTATCGGGTTGGATTCTCCGGCGAGGCGCCAGAGATTCCGGAATCTGTGTCGGAGGAAGTTAAGGACTTCTTGGGGAAGTGCTTGAGGAGTGAAGCGAGTAAGAGATGGACGGTGAAGGAGCTTCTGGGACACGCGTTCGTTGCGGAATCGCGTTTTGTGGGAATAGAATGTGATGAGCATGATTTGGACACACCCACAAGTGTTTTGGAACCACAAGGCCTTTGGAACTGGGACACCAATCAGGACTCGCCACGTGGCATCTCTTCAATGAATTCTCCTAGTGCTAGGGACAGAGTTCTTGGGTTGTGTGGTGATGATGAGCCTAACTGGGATCTTAATAATGCTGATGATGATAAGTGGATCACTGTGAGAAGTAATGAGGACTACTCTCCCGTTGGGATAGCTCAGGATTTTTGTTCAGACAATGTTAGGATCCTTAGAGAGGATGATGAGAATGTTTTGGTGAATTTTTATGAACCACCACAGGATGTAGTAGTAATTTGCAATGTAATTCATGAATTGAGTAGATGGAATGATGTAGTAGTTGTTGTTGGTGATTCTTACCTTTGCAGAATCATTGATTGTAAGTGTTGCATTAGAGATTCAGTGTTTTTAGGGTGTTGTTCATCATGTTCATCTCTAAACATTTATTATTATTGTTGTAAGAAGAAAGAAATTTATGTTACGCATGGTCTCCTCTTTAATTCCACTTTGGATGATATGGCTACTTTACAATTTAAATTTCCTATTCTACTTCAATGGAATAATAACGTGTTCCCAATAATGTGA	1437	0.4753	MDYYWTRGHTLGRGSTATVYTAEFHGFGELFAVKSAEVHRSEELRKEQGLLSSLNCPQIVKYKGYDVTYEDGRYFYNLFLEYAPRGTLLDVIAHYNHGGATMEHSLASVYTRQILLGLNYLHSNGIVHCDVKGQNVLITQHGAKIADFGCARKVGSGAGGRGGVIAGTPAFMAPEVARGDEQGFPADVWALGCTILEMVTGKPPWKDVSGDPVSVLYRVGFSGEAPEIPESVSEEVKDFLGKCLRSEASKRWTVKELLGHAFVAESRFVGIECDEHDLDTPTSVLEPQGLWNWDTNQDSPRGISSMNSPSARDRVLGLCGDDEPNWDLNNADDDKWITVRSNEDYSPVGIAQDFCSDNVRILREDDENVLVNFYEPPQDVVVICNVIHELSRWNDVVVVVGDSYLCRIIDCKCCIRDSVFLGCCSSCSSLNIYYYCCKKKEIYVTHGLLFNSTLDDMATLQFKFPILLQWNNNVFPIM*	479

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ahy4g0404	478	PANTHER	CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED	5	357	-	-
Ahy4g0404	478	Pfam	Protein kinase domain	6	262	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Ahy4g0404	478	Gene3D	Transferase(Phosphotransferase) domain 1	2	289	-	-
Ahy4g0404	478	ProSitePatterns	Protein kinases ATP-binding region signature.	11	34	IPR017441	GO:0005524
Ahy4g0404	478	ProSiteProfiles	Protein kinase domain profile.	5	263	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Ahy4g0404	478	PANTHER	MAP KINASE KINASE KINASE	5	357	-	-
Ahy4g0404	478	SMART	serkin_6	5	263	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Ahy4g0404	478	CDD	STKc_MAPKKK	5	263	-	-
Ahy4g0404	478	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	126	138	IPR008271	GO:0004672\|GO:0006468
Ahy4g0404	478	SUPERFAMILY	Protein kinase-like (PK-like)	5	301	IPR011009	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy4g0404	Ahy-Chr4	5084429	5086507	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy4g0404	5	263	MAP Kinase Kinase Kinase	AT2G32510	55.894	6.72e-94	287

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Ahy4g0404		Pkinase	6.60E-54	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy4g0404	K20716		-	gmx:100802174	389.037

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy14g0482	14	6348181	6350085	Ahy4g0404	4	5084429	5086507	hybridization

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