Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0368 ATGATGCAGCCAGGACCCGGAATGCCTCCAACAAACATGGGCCAGCAGCCACCACAGCAGTACCAACAGCAGCCGCCGCAGCAGCAACCGCCATACATGATGATGCCGCCTCAGCCTCAGGCGCCCCCACCCATGTGGGCTCCTTCCGCCCAGGCGCCGCCTCAGCAGGTTGCTCAGCCGCAGCAATCGGCTCAGCCAACCAGCGCCGACGAGGTCCGCACCCTCTGGATCGGAGACTTGCAGTACTGGATGGACGAGAACTACCTCTACACCTGCTTCGCTCACACCGGCGAGGTGACCTCAGTAAAGGTTATCCGGAACAAGCAAACTGGTCAGTCTGAGGGTTATGGTTTTATCGAGTTTGGTAGCCGGGCCGGAGCTGAGAGAGTGCTCCAGTCATATAACGGAGCGATTATGCCAAATGGTGGGCAGAGCTTCAGATTGAACTGGGCTACATTTAGTGCCGGTGAGAAGCGTCATGATGATAGTCCAGATCACACCATATTCGTTGGTGATTTGGCTGCAGATGTTACTGATTACCTCCTTCAGGAGACATTTAGGACTCGTTATAGCTCGGTGAAGGGGGCAAAAGTTGTGATTGATAGGCTCACTGGCCGGACTAAGGGTTATGGTTTTGTAAGATTTGCGGATGAAAGTGAACAAATGAGGGCTATGACTGAGATGCAAGGGGTTCTTTGTTCAACTAGACCCATGAGGATTGGACCGGCCTCTAATAAAAATCCTGCCACTCAGCAGAAAGCATCTTATCAGAATCCTCAAGGTGCACAGAACGAGAATGATCCAACTAATACAACAATTTTTGTGGGCAATTTGGACCCCAACGTCACTGATGATCTTCTGAGACAAGTTTTTGGTCAGTACGGAGAGTTAGTTCATGTGAAGATTCCAACGGGCAAGCGATGTGGGTTTGTCCAATTTGCAGACAGGAGCTGTGCAGAAGAGGCACTAAGGGTTTTGAATGGATCCCAGTTGGGTGGACAAAATGTACGGCTCTCATGGGGCCGCAGCCCTTCAAACAAACAGTCTCAGCCGGAAACAAACCAGTGGAGTGGCGGGAGTGGTACCGGCGGGAGTGGCGGATACTATGGATACGCTCAAGGCTATGAAAATTATGGTTATGCTCCTACTGGACAGGACCCCAACATGTATGGCAGTTATCCGGGGTATCCTAACTACCAACCTCCGCAGCAACAGCAGCAATTAGGATATAGTTGA 1236 0.5162 MMQPGPGMPPTNMGQQPPQQYQQQPPQQQPPYMMMPPQPQAPPPMWAPSAQAPPQQVAQPQQSAQPTSADEVRTLWIGDLQYWMDENYLYTCFAHTGEVTSVKVIRNKQTGQSEGYGFIEFGSRAGAERVLQSYNGAIMPNGGQSFRLNWATFSAGEKRHDDSPDHTIFVGDLAADVTDYLLQETFRTRYSSVKGAKVVIDRLTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPASNKNPATQQKASYQNPQGAQNENDPTNTTIFVGNLDPNVTDDLLRQVFGQYGELVHVKIPTGKRCGFVQFADRSCAEEALRVLNGSQLGGQNVRLSWGRSPSNKQSQPETNQWSGGSGTGGSGGYYGYAQGYENYGYAPTGQDPNMYGSYPGYPNYQPPQQQQQLGYS* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0368 411 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 22 408 - -
Ahy4g0368 411 SUPERFAMILY RNA-binding domain, RBD 72 247 IPR035979 GO:0003676
Ahy4g0368 411 Gene3D - 246 381 IPR012677 -
Ahy4g0368 411 CDD RRM1_SECp43_like 74 154 - -
Ahy4g0368 411 MobiDBLite consensus disorder prediction 1 70 - -
Ahy4g0368 411 MobiDBLite consensus disorder prediction 238 271 - -
Ahy4g0368 411 Gene3D - 165 241 IPR012677 -
Ahy4g0368 411 MobiDBLite consensus disorder prediction 339 363 - -
Ahy4g0368 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 153 IPR000504 GO:0003723
Ahy4g0368 411 SMART rrm1_1 272 339 IPR000504 GO:0003723
Ahy4g0368 411 SMART rrm1_1 167 241 IPR000504 GO:0003723
Ahy4g0368 411 SMART rrm1_1 74 149 IPR000504 GO:0003723
Ahy4g0368 411 CDD RRM2_SECp43_like 165 244 - -
Ahy4g0368 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 343 IPR000504 GO:0003723
Ahy4g0368 411 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 22 408 - -
Ahy4g0368 411 SUPERFAMILY RNA-binding domain, RBD 255 370 IPR035979 GO:0003676
Ahy4g0368 411 MobiDBLite consensus disorder prediction 397 411 - -
Ahy4g0368 411 CDD RRM3_NGR1_NAM8_like 270 341 - -
Ahy4g0368 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 245 IPR000504 GO:0003723
Ahy4g0368 411 MobiDBLite consensus disorder prediction 240 271 - -
Ahy4g0368 411 MobiDBLite consensus disorder prediction 52 70 - -
Ahy4g0368 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 140 IPR000504 GO:0003723
Ahy4g0368 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 336 IPR000504 GO:0003723
Ahy4g0368 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 168 231 IPR000504 GO:0003723
Ahy4g0368 411 MobiDBLite consensus disorder prediction 23 50 - -
Ahy4g0368 411 Gene3D - 72 152 IPR012677 -
Ahy4g0368 411 MobiDBLite consensus disorder prediction 339 362 - -
Ahy4g0368 411 MobiDBLite consensus disorder prediction 383 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0368 Ahy-Chr4 4624437 4628314 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g0368 74 353 Eukaryotic Initiation Factors Gene Family AT4G34110 28.772 6.06e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0368 - - aprc:113864230 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g0448 14 5893993 5897703 Ahy4g0368 4 4624437 4628314 hybridization
Ahy11g2395 11 138588819 138592790 Ahy4g0368 4 4624437 4628314 PCT
Ahy1g2501 1 103442915 103446856 Ahy4g0368 4 4624437 4628314 PCT