Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0321 ATGATTATCTCGGTATCTGGCTCCTCAGCTTGCAAACAAGTACAAGAGCCTCTAGTAAGTTTCCAAAAGGGATTTACGAACATGTTATATAATCGGAACAATAATAATAAGGATAAGGTGGTGGTGATATTGGGGGCCACCGGAACCGGAAAGACCAAGTTGGCCATAGACCTTGCCAACCACTTCCCACCGGCTGAGATTGTTAACTCCGACAAAATGCAAGTCTACAAGGGCCTTGACATCACCACTAATAAGGTTACTCCTCAAGAGGCTCGTGGGGTCCCACATCATCTACTTGGCACAATTCACCCCAATGCCAACTTCACCGCCCATGATTTTTGCCGCCAAGCCACCTCCGCCGTCGATTCCATCGTTGCTCGAGATGCCCTCCCCATCATCGCCGGTGGCTCCAATTCCTATCTTGATGCTCTCATCAACCACCACTCCACCTTTAGATTAAGGTACGAGTGTTGCTTCCTATGGGTGGATGTTTCAATCCCCATACTGCATGCGTCGCTTCGATCACGCGTGGATCGCATGATCGAAGCGGGACAAGTGGAGGAAGTGCGGAAATTCTTCGAGCCATTGGCAGATTACGAGAGGGGAATAAGAAGAGCGATAGGGGTGCCAGAGTTCAACGAGTTTCTAAGAGCAGAGGCCTTAGGAGCAGATGAAGAGACAAAGAAGATGCTCTTAGACATAGCCATTGCAAGAATCAAGGTCAACAACTGCACCCTCGCCAATCGCCAAATCCACAAGATTCAGCGACTCCACAACACCTGGAAGAGGACCATGCATCGCCTCGACGCCACGCAGGTTTTCTTGAACCGTAATTCCTCTGATCATCACCAATCTCAAAATTCCTGGGAGGAGCATGTTCTTGCCAAGAGCCTTAGGATTCTTCACAACTTCCTCTACGAGGATAACAATAAACATCTTCTTGTTCCTTCCGGAATTAATGTTTCTTCTTCTTCGCCGCCGGTGGCAATGGCTGCCGTGGCCGCAGCCGCCACGCATTAG 1020 0.4941 MIISVSGSSACKQVQEPLVSFQKGFTNMLYNRNNNNKDKVVVILGATGTGKTKLAIDLANHFPPAEIVNSDKMQVYKGLDITTNKVTPQEARGVPHHLLGTIHPNANFTAHDFCRQATSAVDSIVARDALPIIAGGSNSYLDALINHHSTFRLRYECCFLWVDVSIPILHASLRSRVDRMIEAGQVEEVRKFFEPLADYERGIRRAIGVPEFNEFLRAEALGADEETKKMLLDIAIARIKVNNCTLANRQIHKIQRLHNTWKRTMHRLDATQVFLNRNSSDHHQSQNSWEEHVLAKSLRILHNFLYEDNNKHLLVPSGINVSSSSPPVAMAAVAAAATH* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0321 339 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 25 312 IPR039657 -
Ahy4g0321 339 Pfam IPP transferase 153 252 - -
Ahy4g0321 339 Pfam IPP transferase 74 148 - -
Ahy4g0321 339 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 166 265 - -
Ahy4g0321 339 Gene3D - 37 305 IPR027417 -
Ahy4g0321 339 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 25 312 - -
Ahy4g0321 339 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 198 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0321 Ahy-Chr4 3995332 3997755 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g0321 154 305 C2H2 Transcription Factor Family AT2G27760 29.213 9.77e-18 82.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g0405 14 5337860 5339908 Ahy4g0321 4 3995332 3997755 hybridization
Ahy11g2438 11 139238442 139240137 Ahy4g0321 4 3995332 3997755 PCT
Ahy1g2473 1 103112564 103114150 Ahy4g0321 4 3995332 3997755 PCT
Ahy4g0321 4 3995332 3997755 Ahy11g2438 11 139238442 139240137 PCT
Ahy4g0321 4 3995332 3997755 Ahy1g2473 1 103112564 103114150 PCT