Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0280 ATGTACAGATGGCTCTTCCACACACACCACCGCAACCATATACATGGCTCTGGCCACCTGCCTCACCTCTATCAGCCTGGCCCTCACCTCCTCCAGGATGACCACGATCACCACCTCCGGTACTCCCACCCTGACCACCATCACCTCTACCATTGTGGCCCCGTAACCACCTCCACCACCTCCCTGACCTCCCGTCACCACCGTTGTACCCTCCTCCACCACCACCACTTCCCTGACCCCGTCGTCACCTCCATCATCTCCGTCATCACCACCTTCGTCCTCACCGCTACCCTCATCCTCTCCGCCTCTGCCTTCACGTCGGCCTCTACCTCACCACCACCTCTAGCTCCTCTACGGCCGCGACCCCTCCCCCCTCGCCGTCCAACCATTCCCAACCCTTCCCACCAAACCCCATTTCCGATTCCCGTCCTCAAAAAAGAATCAAAAGACCCTGTGGTTCAGTTTCTGGAAGGAGAACTTCTCATAGTGTGTTTGTATTCCAATCCAGGTGGACGCTTTGCCTCAAGGGAAAAAATGAGCCTTCTAAAGAACTGCCGAAGTTTTCTGTCAAACTTTTTCTTCATTCCAGTGGGCATGTTGCAGCGAAATTCCAATATGACCAGGTTATGGATGTTCCCGCTTTCTTCCTTGTCCGAAGCAGAGAAGGTTCTAGGAGAAATATCTAATTATAAAGTTCAGTTGGAGGCGGTAAAAGCCAAAATCAAATCTGCTAAATCAAAAGATGAGTCTGAATCTCTTAAATTTACTCAAAAGAAACTGATTAACAAGGCAGGTTGCAAGTTTCTTATATTTGCGCACCATCAGCCAATGATAGATGCGATACATGAGTGCCTTCTTAAGAAAAAAGTGGGTTGCATCTGGATTGATGGAGGTACACCCGCTGCATCAAGGCAACAATTGGTTACAGATTTCCAGGAAAAGGATTATATCAAGGCAGCTGTACTATCCATTAAAGCGGGAGGAGTTGGATTAACTTTAACTGCTGCAAGCACAGTTATCTTTACAGAACAATCCTGGACTCCAGGTGACCTAATTCAGGCCAAAGATCGTGCATATAGAATTGGTCAGGGATGTGGTGCAATTCAAACCGGATAA 1116 0.4875 MYRWLFHTHHRNHIHGSGHLPHLYQPGPHLLQDDHDHHLRYSHPDHHHLYHCGPVTTSTTSLTSRHHRCTLLHHHHFPDPVVTSIISVITTFVLTATLILSASAFTSASTSPPPLAPLRPRPLPPRRPTIPNPSHQTPFPIPVLKKESKDPVVQFLEGELLIVCLYSNPGGRFASREKMSLLKNCRSFLSNFFFIPVGMLQRNSNMTRLWMFPLSSLSEAEKVLGEISNYKVQLEAVKAKIKSAKSKDESESLKFTQKKLINKAGCKFLIFAHHQPMIDAIHECLLKKKVGCIWIDGGTPAASRQQLVTDFQEKDYIKAAVLSIKAGGVGLTLTAASTVIFTEQSWTPGDLIQAKDRAYRIGQGCGAIQTG* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0280 371 Gene3D - 196 365 IPR027417 -
Ahy4g0280 371 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 243 364 IPR027417 -
Ahy4g0280 371 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 237 363 IPR030101 GO:0006281|GO:0031297|GO:0036310
Ahy4g0280 371 SMART helicmild6 279 362 IPR001650 -
Ahy4g0280 371 CDD SF2_C_SNF 263 363 - -
Ahy4g0280 371 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 256 371 IPR001650 -
Ahy4g0280 371 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 237 363 - -
Ahy4g0280 371 Coils Coil 220 247 - -
Ahy4g0280 371 Pfam Helicase conserved C-terminal domain 262 362 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0280 Ahy-Chr4 3549967 3554817 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g0280 238 363 RAD5 or RAD16-like Gene Family AT1G05120 30.709 2.51e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0280 K14440 - ahf:112723272 410.994