Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0273 ATGGAGCCCCTCCCTTCTCTCCCTTCCCCTCTAAACAACAACAACAACAACAACAACATGGACGATTCTTCTTCAATTTGGGATCTTACTTATCTTCTCGATTTCAACCTCGACGATTTACCCCTTGACCCTCACCAACCATCTCAACCGTTGGATTTCGATCCTCCAGCTGCTCCCGATCCACACAATATTCCTCCTCCTTCTCCTCTTCCCGCCAACGACAAGGTTCGGAAACGCGACCCGAGGCTCACGTGCTCCAACTTTCTCGCGGGCCGGGTTCCATGTGCGTGCCCCGAGATAGATGCTCAGATCGAGAACGAGGGTCTCCCCGGCAAGAAGCGCGTGCGCACCGCTTCCGCCGCGCGTGGCTCACCCCCGACGGTTTGTTGCCAGGTTCCTGGCTGCGAGGTCGATATCACGGAGCTGAAGGGGTACCACCGGAGGCATAGGGTTTGCCTACGCTGTGCTAATGCTGCCACTGTTATGCTCGACGGCGAGGCCAAGAGATACTGTCAACAGTGTGGCAAGTTTCACGTGTTGTCGGATTTTGATGAAGGTAAACGTAGCTGTAGGAGAAAGTTAGAGCGCCATAACAATAGGAGGCGAAGAAAGCCAGCAGATTCAAGAGCTGAAGCTGCTCATGAACCTCTACCGGTTGCACAAAATGAGGATTCAAATAATGACGGGGAAACAGGAAAAGGTTTAGATTCTTCAAATTTGAGTTGTGAAATAAATGAAAAAGAAGTGTCACTGGATCTTGAAGATGAACCAGTTGCCAATCTTAACTCAGCTCCTGATATGCAGAATATTACAAATGACAGTGTTATGACTTTTCTTGCTTCTGGGGAAACACAAGTGAATAGTGGAAAAGATGCTTCCAACCTCTCTAATTCTCCTTCGTATTGTGACAATAAGAGTGCTTATTCATCTTTGTGCCAAACAGGTCGGATTTCTTTCAAGCTTTATGATTGGAACCCTGCAGAATTTCCTAGAAGGCTACGCCACCAAATATTCCAATGGTTGGCGAGTATGCCTGTTGAGCTTGAGGGATATATCCGCCCAGGGTGTACCATCCTGACAATTTTTATCGCCATGCCAAAGAATATGTGGATAAATTTACAGGAAGACCCTATGTACTATGTGCGCGATCTTGTTGCTCCTGGAAAGTTCCTATCTGCAAGAGGCAATGCACTAATTTATCTGAATGATATGTTCTTCCGCATTATGAAAGATGGAACTTCTGTGACAAAAGTCAAGGTAAATATGCAGGCACCAAGGCTTCACTATGTTCATCCCACATACTTTGAGGCCGGGAAACCTCTGGAGTTTGTTGCTTGCGGAAGTAACTTGATGCAGCCTAAGTTTCGGCTTCTTGTATCTTTTTCTGGAAAGTATCTGAAGTGTGAATATTGTGTTCCATCTCCACATAACTGGACTGGGAACAATATGTCATGTGCTTTTGAGAATCAGTTATACAAGATATATGTCCCTCATACAGAGGAAACTCTCTTTGGGCCTGCATTTATTGAGGTGGAGAATGAGTCTGGTTTATCAAACTTCATTCCTGTTCTCATTGGGGACAAAGAAATTTGCAGTGAGATGAGGACATTACAGCAAAGGTTAGATGAGTCTCTTCATTCTAAACAATTCCAGTCTACATCTGGTGGTTCTATCTGCAGCTTGTGTGAAGATTTTGCACATAGGCACACATCATCAGACTTGCTTGTAGATATAGCATGGTTGCTTAAGAACCCTACCTCAGAAAATTTTGAGAGAATGATGACGGCTTCACAAATTCAAAGATACTGTTACTTGTTGGACTTTCTTATATGCCATGATTCAATACTGATTTTGGAAAAAATATTACCAAAGTTGGTGATCTTTACAGAAGGCTTGAAATCAAATATTGTGATTAGTCGGACGAGTGATGTTGATGTGACACAATTACTGAATTGCATGCATCTTGCTAGAGATGTTATTAATCAGAATCATCAGAAAGGCAGAGGCATAGTTGTGCATTCTGAAACAGAAGGCTTTCGGATTGAAAAAACCTGCAGCCAAGACAGCTTGCCATCAGTTTCGAGAATAAAAAGTCAGGATGTTCTATCCAGAACGGATTCAAAGTGTGGAATAATGAGAAGCCCAACATCTAATGACAAAATTGATAGGATACCACTTTTGAAGAGGGAGATTATAATGAATATGGAAGAGTTGCCTAAACGATCCAGCCGGCGATATGTCGGTAGGGGATTCTTGAGCTCTCGACCGGCAATGTTTGTGATTGTTTCGGTTGCTGTTTGTCTTGCAGTATGTGTAGCCGTCCTTCACCGGGGGAGGGTTAGTGAGTTAGCTGTATCCATTAGAAGGTGCTTGTTTAACTCTTAG 2385 0.4403 MEPLPSLPSPLNNNNNNNNMDDSSSIWDLTYLLDFNLDDLPLDPHQPSQPLDFDPPAAPDPHNIPPPSPLPANDKVRKRDPRLTCSNFLAGRVPCACPEIDAQIENEGLPGKKRVRTASAARGSPPTVCCQVPGCEVDITELKGYHRRHRVCLRCANAATVMLDGEAKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRKPADSRAEAAHEPLPVAQNEDSNNDGETGKGLDSSNLSCEINEKEVSLDLEDEPVANLNSAPDMQNITNDSVMTFLASGETQVNSGKDASNLSNSPSYCDNKSAYSSLCQTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCTILTIFIAMPKNMWINLQEDPMYYVRDLVAPGKFLSARGNALIYLNDMFFRIMKDGTSVTKVKVNMQAPRLHYVHPTYFEAGKPLEFVACGSNLMQPKFRLLVSFSGKYLKCEYCVPSPHNWTGNNMSCAFENQLYKIYVPHTEETLFGPAFIEVENESGLSNFIPVLIGDKEICSEMRTLQQRLDESLHSKQFQSTSGGSICSLCEDFAHRHTSSDLLVDIAWLLKNPTSENFERMMTASQIQRYCYLLDFLICHDSILILEKILPKLVIFTEGLKSNIVISRTSDVDVTQLLNCMHLARDVINQNHQKGRGIVVHSETEGFRIEKTCSQDSLPSVSRIKSQDVLSRTDSKCGIMRSPTSNDKIDRIPLLKREIIMNMEELPKRSSRRYVGRGFLSSRPAMFVIVSVAVCLAVCVAVLHRGRVSELAVSIRRCLFNS* 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0273 794 MobiDBLite consensus disorder prediction 220 238 - -
Ahy4g0273 794 MobiDBLite consensus disorder prediction 48 72 - -
Ahy4g0273 794 MobiDBLite consensus disorder prediction 7 23 - -
Ahy4g0273 794 MobiDBLite consensus disorder prediction 1 23 - -
Ahy4g0273 794 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 22 792 IPR044817 GO:0003677
Ahy4g0273 794 SUPERFAMILY SBT domain 128 207 IPR036893 GO:0003677|GO:0005634
Ahy4g0273 794 MobiDBLite consensus disorder prediction 40 77 - -
Ahy4g0273 794 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 22 792 - -
Ahy4g0273 794 Gene3D - 121 191 IPR036893 GO:0003677|GO:0005634
Ahy4g0273 794 ProSiteProfiles Zinc finger SBP-type profile. 127 204 IPR004333 GO:0003677
Ahy4g0273 794 Pfam SBP domain 130 204 IPR004333 GO:0003677
Ahy4g0273 794 MobiDBLite consensus disorder prediction 194 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0273 Ahy-Chr4 3460414 3465871 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g0273 23 788 SBP-box Gene Family AT5G18830 47.510 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ahy4g0273 SBP 7.70E-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0273 - - gmx:100776034 1105.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g0351 14 4778379 4784187 Ahy4g0273 4 3460414 3465871 hybridization