Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0272 ATGCAAGCAGCTCAAGCAGCAGCCACTGATGAAGTCTCTGAGATTTCACCCCAGATTAACCACTGTTCGAACAAAGAAGTTTCAGATCATAGACCAAGTGGGAAACGTCCTGATATTTCACTTCAAGTTCCACCTAGACCTGTAGGGTTTGGCAGTGGAAGGGCTTTGGACCATTCTCAAAGTTTCTCCAAAGGGATATCATCATCAAGAGGTTTTTTGCGGGCATTGAGCTTGAAAAGAAAAGCTAATGTAACAGATGGCGAAAGAAGCTGCCTCCTTAATTCAGACTCGAAGACATCTGCGGACAGTTCTAATATGGATTCGATATCTGACGCTGCATGGAAAAGATGCACTTCTCTTCCTGTTACTCCTGCATCAAATCTGTCTCCTTCGGTTTCAACACCTGTTTCTGCAAGGACTTATACTGAACAGAAGCAACATAAAGATGTTGGTCGTTCCAAGGTTTCAAGGTCCCTTTCTGTACCTGGGAGAAATGTTGTTATTGTAAGATCCATCTCCTTTTCTACCCGTAGTGAACAGGATCAGCAAGATACAAATGATGATCAGATAACTCCCGTGCCACCAGAAGGTGCTGATGATGAAGAAATTCCTGAAGAGGAAGCAGTGTGCAGGATATGTCTTGATGTCTGCGATGAAAGAAATACCTTGAAAATGGAATGTAGTTGCAAAGGTGACCTGAGATTGGTGCATGAAGAATGTGCAATAAAATGGTTTAGCACAAAGGGAAATAAGAAATGTGAAGTATGTGGGCACGAGGTTCAGAATTTACCCGTAACTTTGCTTCGTGTTTCCAGCTCTATTCAACGGCAAAATAGACAAGTGCAGGGTCAACTAAACTCAAGTTCAGAATCAATAAATGCCTGGCAAGACTTTGTGGTGCTCGTCCTGATAAGCACAATATGCTACTTTTTCTTCATTGAACAGCTCCTGCTTCCTGAGTTGAAGACTCAAGCCATCATAATAGCAGCACCATTTGCCTTTACATTGGGCCTCCTGGCATCTATTTTTGCAGTCATCCTTGCAATTAGAGAGTATATATGGACATATGCTGCTCTTGAGTTCGCTCTTGTGGCTATAACCGTGCATCTGTTTTATACCATGTTGCATTTGAAGGCCATCTATGCAATACTACTTTCATCAGTTTTGGGTTTTGGAATTGCTATGAGCCTCAACTATTTATATATCCAATATGTTACTTGGAGACTTCAGGTCTCTCATAGTGATAACCTTCCAGTTTGA 1260 0.419 MQAAQAAATDEVSEISPQINHCSNKEVSDHRPSGKRPDISLQVPPRPVGFGSGRALDHSQSFSKGISSSRGFLRALSLKRKANVTDGERSCLLNSDSKTSADSSNMDSISDAAWKRCTSLPVTPASNLSPSVSTPVSARTYTEQKQHKDVGRSKVSRSLSVPGRNVVIVRSISFSTRSEQDQQDTNDDQITPVPPEGADDEEIPEEEAVCRICLDVCDERNTLKMECSCKGDLRLVHEECAIKWFSTKGNKKCEVCGHEVQNLPVTLLRVSSSIQRQNRQVQGQLNSSSESINAWQDFVVLVLISTICYFFFIEQLLLPELKTQAIIIAAPFAFTLGLLASIFAVILAIREYIWTYAALEFALVAITVHLFYTMLHLKAIYAILLSSVLGFGIAMSLNYLYIQYVTWRLQVSHSDNLPV* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0272 419 PANTHER ZINC FINGER PROTEIN 1 416 - -
Ahy4g0272 419 Pfam RING-variant domain 210 256 IPR011016 GO:0008270
Ahy4g0272 419 MobiDBLite consensus disorder prediction 175 203 - -
Ahy4g0272 419 PANTHER OS02G0165000 PROTEIN 1 416 - -
Ahy4g0272 419 MobiDBLite consensus disorder prediction 1 65 - -
Ahy4g0272 419 MobiDBLite consensus disorder prediction 124 158 - -
Ahy4g0272 419 MobiDBLite consensus disorder prediction 1 23 - -
Ahy4g0272 419 ProSiteProfiles Zinc finger RING-CH-type profile. 202 263 IPR011016 GO:0008270
Ahy4g0272 419 SMART ringv_2 209 257 IPR011016 GO:0008270
Ahy4g0272 419 MobiDBLite consensus disorder prediction 124 141 - -
Ahy4g0272 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 265 IPR013083 -
Ahy4g0272 419 CDD RING_CH-C4HC3_MARCH 210 257 - -
Ahy4g0272 419 MobiDBLite consensus disorder prediction 175 190 - -
Ahy4g0272 419 SUPERFAMILY RING/U-box 206 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0272 Ahy-Chr4 3430802 3435152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g0272 163 317 C3H Transcription Factor Family AT2G37950 29.762 9.48e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0272 - - gmx:100527094 668.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g0348 14 4736572 4741008 Ahy4g0272 4 3430802 3435152 hybridization