Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0209 ATGGACGCTCAACAAACTACCAACAGAATGTGTTCTATAACTCAAATGAAGCAATTCCAATCAAATTCTGCGGGTGGTCTTCATTGTCAAGGTAAAAGGCCAAGTGTCAATTGGTCGCAACATGCCGAAGCACATCAAAACTTTTCCTGCCAGCTCAAGTTCTTGAGCTCCAATTTCCTATTCTCTTTGCCAACACAGAAGCCTCAAAATGGAGAACCAACGGATGGGAGGTTTGTAATCAATCAGAATCCAAATATTCAGACTTCACAGAGGGCACAAGTTGAGAAGGCTTGGCTTGCTCTTTCAAGTCTCCAGAATTCTAGCAGGAGCTATCCCCAACCTGGAAAAACTGTTCAAGTTACTCCTCGGCACCATGAAGACAGGCGAATGAACCCCTTACAAAGGACCCATGAGAACGATAAGCTTAAGCCTCCTGATGTTACCACAACTCCAATTGTTACTAATCATAATTCACAAGTTTTGGACAGTTCAGTGAACAAGCATATCAAGCATGCTGGCCAAATCAACGAGGCATCAACAGGCATGGTTGTTGACATTGATGATGATGACATACTTGAGACCATTGATATTGATCAAATAGTGGAGAACTATCAGTCATCTTCCACACCCAAACCTCCAATTTCCAAATTCCCTCATATTACACCAACTGCAGATACAAATAATTTTGCTAGAGAGGGGGGTAACTGTTTGCCACCAGAACTGTGTATAGATTGCAATCATGGTTACAAGTTAGGGCTTTGTCCTGAAGCAACAAGTCATTTGCAGGAATTTAAGGATAATCTGATTGCTATTTCTAATGAACTACTTGACAATGTTGACAACCTTACTTCTTTGCAGTTGGCAAAGCTTCGGCAAGATAGGTCACAGCTGAATATGAAAATTCAGCAGCTTGAAAAATATATTCATTCCAATAATCTTGAGGACAGGAAAAAGTCAAATTTGTTTGCATCCACAGCACCTACATCATTTGTATATGAAACTCCTCAGCAGACTCTCCACAATACATATGGCGTGTCATCAGGTCCAGTGTCGAGGGAAGCTTTCATCCCAAAGATTATTGAAGTAAATTACATTGAAGGTTCTGGAGACAAGCGCTGGAGCAGTAAGGATTTTCCTTGGACAAAACAGTTGGAGGTTAATAATAAAAAAGTTTTTGGAAATCACTCATTCCGCCCCAATCAAAGAGAGATCATTAATGCCACAATGAGTGGATGTGATGTTTTTGTTTTGATGCCCACTGGTGGAGGAAAAAGTCTGACCTATCAGCTGCCAGCTCTTATCTGTCCTGGTATAACATTAGTAATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATTATGCATCTACTACAGGCAAATATATCCGCTGCTTACTTAAGTGCTAATATGGAATGGACTGAACAGCAAGAGATCTTTAGAGAACTTAATTCCGAATATTGTAATTATAAGTTGTTGTATGTAACACCAGAAAAGATTGCCAAAAGTGACGTGCTTTTACGAAACCTGGAGAGTTTACATGCTCGAGAATTGCTTGCAAGAATTGTAATTGATGAGGCTCACTGTGTGAGTCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGCATATTGAAACAGAAATTCCCAAATACTCCTGTTTTAGCTTTAACAGCTACTGCAACAGCTAGTGTCAAAGAGGACGTTGTGCAAGCATTAGGACTTGTTAACTGCATTATTTTCCGGCAGAGTTTTAATCGCCCAAACTTAAGGTATTCTGTCCTTCCCAAGACCAAAAAGTGTTTGGAAGACGTTGACAAATTCATTAGGGAAAACCATTTTGATGAGTGTGGCATTATATATTGCCTTTCTCGAATGGACTGTGAAAAGGTTGCTGAAAAGTTGCAGGAGTTTGGACATAAGTGTGCATTTTATCATGGTAACATGGATCCTGCTCAACGTGCCTTTGTTCAAAAGCAGTGGAGTAAAGATGAGATCAATATAATTTGTGCTACTGTGGCATTTGGAATGGGTATTAACAAGCCTGATGTTCGCTTCGTAATCCATCATTCCCTTCCAAAATCTATTGAAGGTTATCATCAGGAATGTGGACGAGCTGGTAGAGATGGTCTACGTTCTTCCTGTATATTATATTACAGCTACAGTGATTATATTCGAGTTAAGCATATGATAAGTCAAGGAGCAATAGAGCAAAGTTCAATGACATATGGATACAGTCGCTCAAATATGACAAATTCAGGAAGGATATTGGAAACAAACACTGAAAACCTTTTGCGAATGGTCAGTTATTGTGAAAATGACGTTGATTGTAGGCGTCTTCTGCAGCTTGCTCATTTTGGGGAGAAGTTTGATTCTTCAACTTGTCAGAAAACATGTGATAATTGTTTGAAGAACACAAGTTTTATTGAGAAAGATGTCACCGAGATTGCAAAGCAATTGGTTGAACTGGTTAAGCTAACTGGGCAGAAGGTCTCATCATCACATATATTAGAAGTCTATCGTGGATCCTTAAGCCAGTTGGTCAAGAAACACCGTCATGATACTTTGAGCCTTCATAGTGCTGGGAAGCATCTAGCTAAGGGTGAGGCTTCTCGAGTATTGCATCATCTTGTTGTAGAGGATTTTCTTGTGGAGGAGGTTAAAAAAAGTGATTTTTATGGATCAGTATCATCAATATTGAAGGTAAATGACCCCAAGGTCCGCAACCTGTTGCTCGGGGGCCAGAGAATTATACTGAGGTTCCCATCGTCCATAAAAGCATCAAAATTAGCGAAGTTCGAGTTCACTCCAGCTAAAGGATCTCTGACATCTGGAAAACAAAATAGTCATCAAATTGATACTCCTGCTCAGCCCCAAACTCAAGTTGACATGAATCTTTCAGCAAAGTTATACTCAGCACTGCGGTTGCTGCGGGCAACTATTCTTGGTGAAGCTGGAGACGATGTCTTGGCTCACCACGTATTCTGTAATTCTCTGTTGCAGCTGATGAGCAAGAAAGTACCAAGAACAAAGGAAGAACTCCTTGAACTCAATGGCATGAGCAAGGCCAAGGTAAGCAATTATGGTGATCAGATACTGAAAACCATTGAAAATACCATTAATGAGTATTACAAGTTGGATAAAAGCAGCAATGGCAGTGCTGATTCTGCAAAAAGGAGACGAGATGCAAATGGAGGCCTAGATAGAAATCTTGAGGATGATGATGAGTTGACTAAAAGTACTGGTCGCTCAAAGAAAAGGACAGTGCAGAGAAATAATAAAAAGGCTGAGATATACCATTCTGAAGAGGAAGATAATTACTATGGATGTCTTGATGAGGACCTAGATTTTGACAATATAGAAAATGAAGCACTAAATAGAATAAACAGTAGGAATGCTAATGGAAGAGTACTGCCTCAATGGACACCATCTTGA 3438 0.3999 MDAQQTTNRMCSITQMKQFQSNSAGGLHCQGKRPSVNWSQHAEAHQNFSCQLKFLSSNFLFSLPTQKPQNGEPTDGRFVINQNPNIQTSQRAQVEKAWLALSSLQNSSRSYPQPGKTVQVTPRHHEDRRMNPLQRTHENDKLKPPDVTTTPIVTNHNSQVLDSSVNKHIKHAGQINEASTGMVVDIDDDDILETIDIDQIVENYQSSSTPKPPISKFPHITPTADTNNFAREGGNCLPPELCIDCNHGYKLGLCPEATSHLQEFKDNLIAISNELLDNVDNLTSLQLAKLRQDRSQLNMKIQQLEKYIHSNNLEDRKKSNLFASTAPTSFVYETPQQTLHNTYGVSSGPVSREAFIPKIIEVNYIEGSGDKRWSSKDFPWTKQLEVNNKKVFGNHSFRPNQREIINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANISAAYLSANMEWTEQQEIFRELNSEYCNYKLLYVTPEKIAKSDVLLRNLESLHARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLRYSVLPKTKKCLEDVDKFIRENHFDECGIIYCLSRMDCEKVAEKLQEFGHKCAFYHGNMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGLRSSCILYYSYSDYIRVKHMISQGAIEQSSMTYGYSRSNMTNSGRILETNTENLLRMVSYCENDVDCRRLLQLAHFGEKFDSSTCQKTCDNCLKNTSFIEKDVTEIAKQLVELVKLTGQKVSSSHILEVYRGSLSQLVKKHRHDTLSLHSAGKHLAKGEASRVLHHLVVEDFLVEEVKKSDFYGSVSSILKVNDPKVRNLLLGGQRIILRFPSSIKASKLAKFEFTPAKGSLTSGKQNSHQIDTPAQPQTQVDMNLSAKLYSALRLLRATILGEAGDDVLAHHVFCNSLLQLMSKKVPRTKEELLELNGMSKAKVSNYGDQILKTIENTINEYYKLDKSSNGSADSAKRRRDANGGLDRNLEDDDELTKSTGRSKKRTVQRNNKKAEIYHSEEEDNYYGCLDEDLDFDNIENEALNRINSRNANGRVLPQWTPS* 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0209 1145 CDD SF2_C_RecQ 588 720 - -
Ahy4g0209 1145 MobiDBLite consensus disorder prediction 1048 1098 - -
Ahy4g0209 1145 Coils Coil 287 307 - -
Ahy4g0209 1145 MobiDBLite consensus disorder prediction 1053 1084 - -
Ahy4g0209 1145 Pfam Helicase conserved C-terminal domain 606 710 IPR001650 -
Ahy4g0209 1145 Gene3D HRDC domain 961 1048 IPR044876 -
Ahy4g0209 1145 PANTHER DNA HELICASE RECQ FAMILY MEMBER 131 338 - -
Ahy4g0209 1145 Pfam HRDC domain 969 1037 IPR002121 GO:0003676
Ahy4g0209 1145 Gene3D - 588 807 IPR027417 -
Ahy4g0209 1145 SMART ultradead3 393 596 IPR014001 -
Ahy4g0209 1145 Pfam RQC domain 810 925 IPR018982 GO:0006260|GO:0006281|GO:0043138
Ahy4g0209 1145 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 4A 341 1113 - -
Ahy4g0209 1145 Gene3D - 811 921 IPR036388 -
Ahy4g0209 1145 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 729 IPR027417 -
Ahy4g0209 1145 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 405 580 IPR014001 -
Ahy4g0209 1145 PANTHER DNA HELICASE RECQ FAMILY MEMBER 341 1113 - -
Ahy4g0209 1145 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 519 528 IPR002464 -
Ahy4g0209 1145 MobiDBLite consensus disorder prediction 106 128 - -
Ahy4g0209 1145 Pfam DEAD/DEAH box helicase 399 567 IPR011545 GO:0003676|GO:0005524
Ahy4g0209 1145 Pfam RecQ zinc-binding 722 804 IPR032284 -
Ahy4g0209 1145 SMART helicmild6 630 711 IPR001650 -
Ahy4g0209 1145 CDD DEXHc_RecQ 388 587 - -
Ahy4g0209 1145 ProSiteProfiles HRDC domain profile. 965 1047 IPR002121 GO:0003676
Ahy4g0209 1145 SMART hrdc7 965 1047 IPR002121 GO:0003676
Ahy4g0209 1145 SUPERFAMILY HRDC-like 968 1041 IPR010997 GO:0000166|GO:0044237
Ahy4g0209 1145 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 605 755 IPR001650 -
Ahy4g0209 1145 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 586 856 IPR027417 -
Ahy4g0209 1145 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 4A 131 338 - -
Ahy4g0209 1145 SMART RQC_2 813 924 IPR018982 GO:0006260|GO:0006281|GO:0043138
Ahy4g0209 1145 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 389 864 IPR004589 GO:0004386|GO:0006310
Ahy4g0209 1145 Gene3D - 361 587 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0209 Ahy-Chr4 2863042 2870882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g0209 619 734 Eukaryotic Initiation Factors Gene Family AT3G19760 25.000 2.08e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0209 K10901 - gmx:100800006 1667.9