Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0200 ATGCGAGCTTCATGGGCTGATTTGGCTGCGAATACTGCAGCTGAGAACGCAGGTGCTGGTACTTCAGCCAATAATGCTGGAACTGGTAACAGTTTACCTCCTTCAAGGTCTACTTATGTGCCTCCGCATCTGAGGAACCGGCCGCCTTTGGCTGAATCACCTGCTCCTCCGTATAGTGGCAGTACAACTTCTGGTTCTGGGGCTGGTACAGCTAATGCTGGATCACGTTGGGGTGCACCTCGTGCTGAGTACCGTTCTGGGGTTGGCGGCAGTGGTGGCCGAGGAAGTGCATGGGGGAACAGAAGTGGGGGTTGGGATCGCGGAAGGGACCGTGAGGTCAATCCATTCGGAGATCAGGATGATACGGAGCAAGCATTTAATGAGCAAGAGAACTCGGGGATAAATTTTGATGCCTATGAGGACATTCCGGTGGAGACAAGCGGGGATAATGTGCCACCACCTGTGAATACATTTGCTGAAATTGACTTGGGTGAAGCGCTTAATCTTAATATAATGAGGTGCAAATATGTTAAGCCGACGCCTGTTCAACGGCATGCCATACCAATTTCCCTTGCTGGAAGGGATTTGATGGCCTGTGCACAGACTGGTTCTGGAAAGACAGCTGCTTTCTGTTTCCCAATTATCAGTGGAATTTTGAGGGGCCAACCTGTGCAAAGGCCACCTCGCGGGGTGCGTACAGTTTATCCACTTGCCCTTGTTCTCTCACCAACTAGGGAGCTATCAATGCAAATACATGAAGAGGCTAGGAAGTTTGCATATCAAACAGGGGTTAAGGTGGTTGTTGCTTATGGCGGAGCTCCAATAAACCATCAGCTACGAGATCTTGAGAAGGGGGTGGACATTCTCGTCGCCACTCCTGGAAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCACTTCAGATGATCAGATATCTTGCACTAGATGAGGCAGATAGGATGCTGGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTTGAACAAATGGATATGCCCCCTCCAGGTGTAAGACAGACTATGCTATTCAGTGCCACATTTCCTAAAGAGATACAGAGACTAGCCTCCGATTTCCTGTCAAGATACATTTTTCTCGCTGTTGGAAGAGTTGGGTCAAGTACCGATTTAATTGTCCAGAGAGTCGAGTATGTTCAGGAGTCTGACAAGAGAAGTCATCTTATGGACCTTCTTCATGCACAGAGAGCAAATGGTGTTCAAGGAAAGCAAGCTTTGACATTAGTTTTTGTGGAGACAAAGAAGGGAGCCGATGCACTGGAACATTGGTTGTGCATGAATGGTTTTCCAGCTACTACTATTCATGGAGACAGGACCCAGCAGGAAAGAGAAATGGCGTTAAGGTCATTTAAGAGTGGGAACACACCCATATTGGTTGCCACTGATGTCGCTGCACGTGGTCTTGATATTCCTCATGTTGCCCATGTGGTTAACTTTGACCTTCCAAATGATATTGATGACTATGTACACCGGATTGGAAGGACAGGACGTGCTGGAAAGAAAGGCCTCGCAACTGCGTTCTTTAATGACAACAATGCCTCCCTTGCAAGATCTTTAGCAGAACTAATGCAGGAAGCAAATCAAGAAGTGCCCGCATGGCTCTCACGGTATGCTGCTCGATCTTCATTTGGAGGTAGGAACCGTCGTTCGGGAGGAGGGCGTTTTGGTGGCCGAGACTTTCGAAGAGATGGTTCTTTCAATAGGGGTGGTTCTGATTACTACAATGCTGTAAACAGCAGTGGTGGATATGGGGCATCTGGTGGATATGGTGGAGCATATGGTCCCGGGGCATCCAGTGCATGGGATTGA 1845 0.4829 MRASWADLAANTAAENAGAGTSANNAGTGNSLPPSRSTYVPPHLRNRPPLAESPAPPYSGSTTSGSGAGTANAGSRWGAPRAEYRSGVGGSGGRGSAWGNRSGGWDRGRDREVNPFGDQDDTEQAFNEQENSGINFDAYEDIPVETSGDNVPPPVNTFAEIDLGEALNLNIMRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILRGQPVQRPPRGVRTVYPLALVLSPTRELSMQIHEEARKFAYQTGVKVVVAYGGAPINHQLRDLEKGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTMLFSATFPKEIQRLASDFLSRYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCMNGFPATTIHGDRTQQEREMALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARSLAELMQEANQEVPAWLSRYAARSSFGGRNRRSGGGRFGGRDFRRDGSFNRGGSDYYNAVNSSGGYGASGGYGGAYGPGASSAWD* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0200 614 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 50 583 - -
Ahy4g0200 614 Gene3D - 375 554 IPR027417 -
Ahy4g0200 614 MobiDBLite consensus disorder prediction 104 118 - -
Ahy4g0200 614 Pfam Helicase conserved C-terminal domain 396 511 IPR001650 -
Ahy4g0200 614 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 187 372 IPR014001 -
Ahy4g0200 614 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 383 550 IPR001650 -
Ahy4g0200 614 Pfam DEAD/DEAH box helicase 180 361 IPR011545 GO:0003676|GO:0005524
Ahy4g0200 614 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 527 IPR027417 -
Ahy4g0200 614 MobiDBLite consensus disorder prediction 56 71 - -
Ahy4g0200 614 CDD DEADc_DDX3_DDX4 157 378 IPR044763 GO:0003724|GO:0005524
Ahy4g0200 614 Gene3D - 112 374 IPR027417 -
Ahy4g0200 614 CDD SF2_C_DEAD 384 520 - -
Ahy4g0200 614 SMART helicmild6 430 511 IPR001650 -
Ahy4g0200 614 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 156 184 IPR014014 GO:0003724
Ahy4g0200 614 MobiDBLite consensus disorder prediction 1 122 - -
Ahy4g0200 614 SMART ultradead3 175 387 IPR014001 -
Ahy4g0200 614 MobiDBLite consensus disorder prediction 15 37 - -
Ahy4g0200 614 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 50 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0200 Ahy-Chr4 2737096 2741448 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g0200 154 543 Eukaryotic Initiation Factors Gene Family AT3G19760 32.225 4.19e-63 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0200 K11594 - gmx:100795756 971.459