Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0194 ATGTGCCAGGCACCACCGTTGCTGACTTGCCGCTCCTTGCTGTCACTGCTTGCTGCCGCTCCTTGCCGTCACTGCTTGCTGCCACTCCTTGCCACCGCTGCAAGCCACCGGTATCCTTCCAGAGGCTGCTTTCATTCACCTCACAACCATAAGAATCTATGCTTCAGCGCACCACCAAGACAGACAGATCAAAGAACGAAGAGTAATATGTTAAAGGCAAAGGTATTCAATGGCGCGAACGTGTTCATGTCACGGAACCTGGTTCCGCCCGAGGTATTCGACACTCTTCATGATGTGCTCAAAGACAACGGTGCACAAGTGCACCTCTGCTGCGACCCTTCCCGCAATGGCCCCAATGATTACCATGTCATTTCTTGCAGTAAACATGAGAAGTTTGAGGATCTTAAAGCCAAAGGCTGCAAATTGCTTGGACCCAGATGTGTTCTTTCATGTGCTAAAGAACTTAAGCCTTTGCCTAAAGTTGGATTTACGTGTTGCCTTGCCATGGATGGTGTCAAAATACTTGCATCTGGCTTCGATACCAATGAGAAGCTTAAGATAGAAGAGATTGTGACTGAAATGGGTGGTCTTCTACATACTAAAGCATCACTGGATTTGAACTTTGTCATTGTGAAAAATGTTTTGGCTGCAAAATACAAGTGGGCTTTGAATATACTGAAGAAACCAATAGTTACTTATGAATGGTTAAAGCAATGCTCAGAGGAGCATCGTGTTGTTCCTCAGGAGTCATACAAGGTCCTTCCTTTCTCCGGGTTGACGATTTGTGTTACTGGGATTCCAGCAGATAAACGCAAAGAGATTGAGAAGCTTACTTTACAAAATGGTGGAAAGTACTCTGCAGAATTGACAAAGAAGTGCACTCATTTGATTTCTGATGCTCCTGAAGGTGACAAATATAAGGTAGCAAAACGTTGGGGCCATATTTATACTGTGACGAGGAAATGGTTTGATCAATCTATTGCTCGAAGAGCATGTCTGAACGAGGAGTCCTACCCAGTTCAGAATGGACCTGTATCTTCACAGAAAGTGATTAAGGACATAGATGTACAGCATAGCCAAGAAACGGATATTAGTAAATTTCAATCTGGAGTATCCTCAGCTGTTACAGATCCAAACATGCTGGTTTCTTCTTATGCTGAGTTTGTAGATAAAGACCAAGAAGCTACATGTTCAGAATACACGTCTTCTTTTACAAATGTTGCTACATTTGTCAAAGATACAAATGCTGAAGCACCTCGAGGAAAGCCCAGTGATGAATTGAACCTTGATGGCCCTGTTGCCAATGATTCTGAATCTGATGATAATGATCTGTACTTATCCGAGTGCAAAATCTTTCTTGTTGGCTTTGAAGCTTCTGACATGCGGAAACTAGTTAATATGGTGCGGAAAGGTGGAGGTTCCCGATATATGTCTTTAAATGCCAAGCTGACACACATAGTTGTTGGAAACCCTTCAGAATCGGAAAAGAAGGATGTAAGGAGTCTTGCTGCTTTAGGTGTCATTTATGTTGTTAAAACGTCCTGGCTTGAAGATTGTAACCGTGAAAAGAAAGAAGTCCCTGTTCTAAGGAGACACATTGCATCTGATCTACTTGTTCCAAAAGGAAGCATTGTCAAAGGAGCATCAACAAGCATGTCCATGGTTCAAGGTAAAAGCTGTGGTTTTCCTAAAAGCTTGCAGAGTGCTCAGGTGGTGGGAGTTATGGCCTCTGGAGGTGTAAAGCCAGTATCTTTGGGGAAAGATAAACTGGATGTGGGTACAAGTGTTCACTCATTCAGTAAAGCAATGGGGCAAAATCAACATGCTTCTAATAAGATGACAGCTCCAAAGATGACAGTGACACAACGTGATCCCAGTGTAGAATATGTTAAGTCCACAACAGTTTTCAAAGGGAAAATATTTTGTTTCTCGGATTTATTTCCTGAAGAAAGGAGAGCTGAGGTCATCGAATGGATACATCAAGGGGGAGGACAAGTAATAAGTGGGAAAGTAAAACATGGTGTCCATTTTACTGTTGAATGTCATGGTGTAACACCCATGATGACAGCAAATTCCCAAAGTACATATGTTTCGAGTCATTGGATACGATCTTGCTTACAGGCCGGATACCTAATGGATGTTGGCAGTCATATTCTTTATTCTCCACTTTCCTGTCGCGTTCCCTTGCCCGGGTTTGAAAGCTTTCGGTTTTGTGTTTCGCAATATGAGGAAAAAGAAAGAATTCTACTACGGAACTTGTGTTTTGTTTTGGGAGCTAAATTTGTGGAGAAGTTAACGAAGAAGGTCAGCCATTTGTTGTGTAAATTCAAGAATGGGCCCAAGTATGATGCTGCTTGTAAATGGGGGATCCGGTCAGTTACTGCCGAATGGCTGTTTGAATGTGTCAAACAGAATGGAGTTGTTGCCATAGACCATTTTTTACCAAAAGAAGTCACTGCTCAAGATCGGGAGGCAGGAATTTGTACTGTGAGTCAATTTCCTACTCAGGCCGTTCAAATGATAAGTGATCTGACGTCCCAGTATCTGAATCAATCACAAAATTCGACAGACAAAGTAAATAGAGGCATATATAGCGGACTTGCCAGTAATGGGACCGATTTAAAAATATCAAATATTCAGAGCAAAAAGGCAAGGCTTGTGGAAGATCCTGATAGGGTGTCTTCTGCAGTATATTCAGGTATTCATCATGTCAATGGAATGAATTTTTCTGAAGACAATACCGTAAAAGATGCTGGACAGGTTCCTCATGCTGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGGAGACAAGCAAGATGCATGATCAGAGGTCACCAGGGAGTACAGGGCGTGAGAGAAGTATCTATTCATCGGGTTGTACTATCGTTTGTGAAGAGAATTCCAATCCTAATGCTGTGTTTGGATTGTCGAAACACTGGTTAAACAGAGGTGGCAGAAAAGATGATGATGGTGAGGCTTCTCGAGACAGACGAGCTGAAACTTATGATCATTTTAGCGAAACACAAACAGAATCTCAGGTTGTTGGTTATGAAGAGGATTTGTCTGGAAGGCAAATGCTTATTGACAGAGTTCGAACTCGAAGTAGCGCACAATAA 3123 0.4243 MCQAPPLLTCRSLLSLLAAAPCRHCLLPLLATAASHRYPSRGCFHSPHNHKNLCFSAPPRQTDQRTKSNMLKAKVFNGANVFMSRNLVPPEVFDTLHDVLKDNGAQVHLCCDPSRNGPNDYHVISCSKHEKFEDLKAKGCKLLGPRCVLSCAKELKPLPKVGFTCCLAMDGVKILASGFDTNEKLKIEEIVTEMGGLLHTKASLDLNFVIVKNVLAAKYKWALNILKKPIVTYEWLKQCSEEHRVVPQESYKVLPFSGLTICVTGIPADKRKEIEKLTLQNGGKYSAELTKKCTHLISDAPEGDKYKVAKRWGHIYTVTRKWFDQSIARRACLNEESYPVQNGPVSSQKVIKDIDVQHSQETDISKFQSGVSSAVTDPNMLVSSYAEFVDKDQEATCSEYTSSFTNVATFVKDTNAEAPRGKPSDELNLDGPVANDSESDDNDLYLSECKIFLVGFEASDMRKLVNMVRKGGGSRYMSLNAKLTHIVVGNPSESEKKDVRSLAALGVIYVVKTSWLEDCNREKKEVPVLRRHIASDLLVPKGSIVKGASTSMSMVQGKSCGFPKSLQSAQVVGVMASGGVKPVSLGKDKLDVGTSVHSFSKAMGQNQHASNKMTAPKMTVTQRDPSVEYVKSTTVFKGKIFCFSDLFPEERRAEVIEWIHQGGGQVISGKVKHGVHFTVECHGVTPMMTANSQSTYVSSHWIRSCLQAGYLMDVGSHILYSPLSCRVPLPGFESFRFCVSQYEEKERILLRNLCFVLGAKFVEKLTKKVSHLLCKFKNGPKYDAACKWGIRSVTAEWLFECVKQNGVVAIDHFLPKEVTAQDREAGICTVSQFPTQAVQMISDLTSQYLNQSQNSTDKVNRGIYSGLASNGTDLKISNIQSKKARLVEDPDRVSSAVYSGIHHVNGMNFSEDNTVKDAGQVPHAVPDVAAAIEDLLEETSKMHDQRSPGSTGRERSIYSSGCTIVCEENSNPNAVFGLSKHWLNRGGRKDDDGEASRDRRAETYDHFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSAQ* 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0194 1040 CDD BRCT_TopBP1_rpt2_like 730 805 - -
Ahy4g0194 1040 Gene3D BRCT domain 255 341 IPR036420 -
Ahy4g0194 1040 ProSiteProfiles BRCT domain profile. 441 533 IPR001357 -
Ahy4g0194 1040 ProSiteProfiles BRCT domain profile. 732 815 IPR001357 -
Ahy4g0194 1040 Gene3D BRCT domain 629 724 IPR036420 -
Ahy4g0194 1040 SUPERFAMILY BRCT domain 634 721 IPR036420 -
Ahy4g0194 1040 Gene3D BRCT domain 727 819 IPR036420 -
Ahy4g0194 1040 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 76 1028 - -
Ahy4g0194 1040 Gene3D BRCT domain 106 163 IPR036420 -
Ahy4g0194 1040 MobiDBLite consensus disorder prediction 415 440 - -
Ahy4g0194 1040 SUPERFAMILY BRCT domain 128 252 IPR036420 -
Ahy4g0194 1040 SUPERFAMILY BRCT domain 255 341 IPR036420 -
Ahy4g0194 1040 ProSiteProfiles BRCT domain profile. 251 340 IPR001357 -
Ahy4g0194 1040 ProSiteProfiles BRCT domain profile. 631 719 IPR001357 -
Ahy4g0194 1040 SUPERFAMILY BRCT domain 443 527 IPR036420 -
Ahy4g0194 1040 CDD BRCT_TopBP1_rpt2_like 255 330 - -
Ahy4g0194 1040 ProSiteProfiles BRCT domain profile. 169 253 IPR001357 -
Ahy4g0194 1040 MobiDBLite consensus disorder prediction 983 1007 - -
Ahy4g0194 1040 SUPERFAMILY BRCT domain 728 816 IPR036420 -
Ahy4g0194 1040 MobiDBLite consensus disorder prediction 983 1017 - -
Ahy4g0194 1040 Pfam twin BRCT domain 259 322 IPR001357 -
Ahy4g0194 1040 Pfam twin BRCT domain 736 797 IPR001357 -
Ahy4g0194 1040 Gene3D BRCT domain 433 530 IPR036420 -
Ahy4g0194 1040 Pfam BRCA1 C Terminus (BRCT) domain 443 519 IPR001357 -
Ahy4g0194 1040 Pfam BRCA1 C Terminus (BRCT) domain 169 239 IPR001357 -
Ahy4g0194 1040 Gene3D BRCT domain 166 254 IPR036420 -
Ahy4g0194 1040 CDD BRCT 172 239 - -
Ahy4g0194 1040 SMART BRCT_7 633 709 IPR001357 -
Ahy4g0194 1040 SMART BRCT_7 443 523 IPR001357 -
Ahy4g0194 1040 SMART BRCT_7 253 330 IPR001357 -
Ahy4g0194 1040 SMART BRCT_7 166 243 IPR001357 -
Ahy4g0194 1040 SMART BRCT_7 73 155 IPR001357 -
Ahy4g0194 1040 SMART BRCT_7 729 805 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0194 Ahy-Chr4 2637695 2649798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g0194 70 1038 Core DNA Replication Machinery Family AT1G77320 50.290 0.0 930
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0194 K10728 - gmx:100804966 1311.98