Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0178 ATGGCATTGTGTAACAAGCTTGGAAATTTCTTGAGACAGAGTGCTTCCGGAAGCGGATTAGCACCTGTTCCATCGATGCTCAATTATATTCGCTGCATGTCCTCAAGCAGGCTTTTCATTGGGGGCCTTTCATACGGAGTTGATGACCAGTCTCTTCGGGATGCATTCTCCGGCTTTGGGGATGTGGTTGATGCAAGGGTGGTCACTGATAGAGACACCGGAAGATCAAGAGGTTTTGGATTTGTCAACTTCTCAAGCGACGAGTCTGCAAGCTCAGCACTCAGTGGAATGGATGGGCAGGATCTAAACGGCCGAGTGATCAGGGTGAGCTATGCTAATGATAGGCCTACTGGACCTCGGGGTGGTGGCGGTGGTTTCGGTGGTGGTGGTGGTGGTTATGGGGGAGGTGGTTACCGTAGAGGTGGAGGTGGTGGTTATGGTGATCCAGACTTCTAG 456 0.5154 MALCNKLGNFLRQSASGSGLAPVPSMLNYIRCMSSSRLFIGGLSYGVDDQSLRDAFSGFGDVVDARVVTDRDTGRSRGFGFVNFSSDESASSALSGMDGQDLNGRVIRVSYANDRPTGPRGGGGGFGGGGGGYGGGGYRRGGGGGYGDPDF* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0178 151 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 147 - -
Ahy4g0178 151 SMART rrm1_1 37 110 IPR000504 GO:0003723
Ahy4g0178 151 SUPERFAMILY RNA-binding domain, RBD 31 145 IPR035979 GO:0003676
Ahy4g0178 151 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 1 147 - -
Ahy4g0178 151 MobiDBLite consensus disorder prediction 112 151 - -
Ahy4g0178 151 Gene3D - 32 148 IPR012677 -
Ahy4g0178 151 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Ahy4g0178 151 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0178 Ahy-Chr4 2326599 2328859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g0178 35 126 Eukaryotic Initiation Factors Gene Family AT1G49760 39.130 1.60e-14 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0178 - - gmx:100499841 186.808