Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0117 ATGGAGTGGAATGCTAAATCTCTTGGGCAATGGGACTGGGAGAACTTATACTCATTCAATACAAAACCAACTGAAAATTCCAAGTTGCAACCAACGGATTGGAGCATGGAAGCAGATGGAGAAATCAATGTTGGGCTGATATATCCGTCCGGTGGTAGTGCTTGTTCCGGTTCTGAACTGATTCATGCTTCATCTAGGAGCTCAAAATCAGCTTCCATGAATTCATCATCAAATGGGGATAGCAAAGCATCCACAACCATGTTCACTTTCGAGCGTTCTCAAGACGACTCAACTGGAAGTGATTCCAAGAAACCATCTTCCATTGATGTTCCTATTTCATCTTCAAATACTGGAAAGAAATGTAAGGCCAATATTCAGAACCTACAACACCCAAGCTGCCAGGTTGAAGGCTGTGGTCTAGACCTCTCATCTGCTAAAGATTACCATCGCAAACACAGGGTTTGCGAAAGCCATTCCAAGTCCCCTAGGGTGCTTATAGCTGGTTTTGAACGTCGATTTTGCCAGCAATGCAGCAGGTTCCACGGTCTATCAGAGTTTGATGACAAAAAGAGAAGCTGTAGACGGCGTCTTTCAGATCACAATGCAAGGCGTCGCAAACCTCAGCCTGAAGCAGTCCAATTAAATACATCTGCTCTGTCTTCATCACCCTATGATGCAAGGCAACTAATGAATCCATTCGTTTATTCAAGAGCTGCGACGAATATAGGTTGGCAAGATATTCAAAACAGCAGGCTACCCCAGACAAAAGATTTCCTGATGAGGCCTGCGAAAGCCTTCGACAAGATACCAAGTATTGTCACTATGCTTTCTGATGATTTTAGTGACCTTGCATCCAAAGGCATGGCAACCAATGGGAAAGAAGATCCTATTAGCTCGTCCGATCCCAACGCCACACAAGATGTCAGCCGTGCTCTCTCTCTTCTGTCAACCAATTCATGGTCTACATATGCTATGACTCCCCGTTTCCCTCTCCCTTCATCACAATATTCTCACCTTGATCAACAACCAGCCAATCCTAACATGTGTATCCCATTCTCAGATTGTGATAATAGCAATCGCTTCCAAGAGTTTCAGATGTTTAGTGCTCCACCCTATGATTCAGGCTATCCTTGCAACCAGCTGGACTAA 1149 0.4439 MEWNAKSLGQWDWENLYSFNTKPTENSKLQPTDWSMEADGEINVGLIYPSGGSACSGSELIHASSRSSKSASMNSSSNGDSKASTTMFTFERSQDDSTGSDSKKPSSIDVPISSSNTGKKCKANIQNLQHPSCQVEGCGLDLSSAKDYHRKHRVCESHSKSPRVLIAGFERRFCQQCSRFHGLSEFDDKKRSCRRRLSDHNARRRKPQPEAVQLNTSALSSSPYDARQLMNPFVYSRAATNIGWQDIQNSRLPQTKDFLMRPAKAFDKIPSIVTMLSDDFSDLASKGMATNGKEDPISSSDPNATQDVSRALSLLSTNSWSTYAMTPRFPLPSSQYSHLDQQPANPNMCIPFSDCDNSNRFQEFQMFSAPPYDSGYPCNQLD* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0117 382 MobiDBLite consensus disorder prediction 91 116 - -
Ahy4g0117 382 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 20 82 IPR044817 GO:0003677
Ahy4g0117 382 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 97 380 IPR044817 GO:0003677
Ahy4g0117 382 MobiDBLite consensus disorder prediction 191 218 - -
Ahy4g0117 382 ProSiteProfiles Zinc finger SBP-type profile. 130 207 IPR004333 GO:0003677
Ahy4g0117 382 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 20 82 - -
Ahy4g0117 382 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 97 380 - -
Ahy4g0117 382 SUPERFAMILY SBT domain 131 212 IPR036893 GO:0003677|GO:0005634
Ahy4g0117 382 Pfam SBP domain 133 206 IPR004333 GO:0003677
Ahy4g0117 382 Gene3D - 124 194 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0117 Ahy-Chr4 1385918 1391020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g0117 1 328 SBP-box Gene Family AT5G43270 38.601 4.46e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ahy4g0117 SBP 3.40E-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0117 - - gmx:100781289 494.967