Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0054 ATGATTAGCATGACGAACATGGGTGATGGTCGGAAAGTGTCCAAAAGTCGCCAATCGTCATCATCAGATGAGGAGGCTAAGACGGGAGGAGAAGGTCATTTAAAGAAAGGCCCTTGGACATCAATAGAGGATGCAATTCTAGTAGACTACGTTACCAAGCATGGAGAGGGGAATTGGAATGCTGTTCAAAGGAATTCGGGACTTGCCCGATGCGGTAAAAGCTGTCGATTACGATGGGCAAATCATTTGAGACCAGATTTGAAAAAGGGAGCATTCACTGAAGAAGAAGAGCGCAGGATCATTGAGCTTCATGCTAAGATGGGAAACAAATGGGCACGGATGGCTGCAGAGCTGCCTGGGCGTACGGACAATGAGATAAAGAACTATTGGAACACAAGAATTAAAAGAATGCAGCGGTCTGGTTTACCAATCTACCCTCCTGACATATGCTTCCGGGTGATGCATGGAAATCAAGAAAGTCAAAATGTTGGCAGGTTGACCGACGGAGTCAACCAGCATGACGATCTTTCACAAACAGACACGTTGAATATACCAGAGTTGGATTTCAAACACGTTAAGATCCCCCTGGATCCATCGATTTTTGACATACCTGAAAACAGCATGTTTGAACAGAGTTCAGATTCATCCCATGGTTACAACATGTTTCCTATCATGCATCCTGCCAAGCGCCTTCGGGAATCAGCAGAAATAATGCAGTATGGTCCGGTATATGAAGAAGATTACATGTCTGATGAAATTACCAACCAGTTTCATGGCAATACTTGTTGTTCTTCTTCATCTTCAATGCCTCTATCCGGAGGCATGAAGTTGGAGCTCCCTTCACTCCAATACTTAGAGACTCAACAAGGCATTTGGGACACACCTGCTTCCCCACTTCCTTCACTTGAGTCTGTTGACACCTTGAGCAGCGGTTTGTTGGAACCAATAATGTATCAACCAATGAAGCATTTTCAAGTGCAAGAAACACCAGATGAAGCAGTCAAGTGTAAGCCGGAATGGGATGAATCCGGGGAGCCGTATTCCCCCTTGGCTCAATCTTCTGCTTCCGTTCTAACCATGTGCTCACCCGACGGACCTCAATCAGTCGAAAACTCAGATCATAATATTAAGCACGAACTAGGCACAGAGTTCCCAACTTACTGTTCTGGGAAGGATGAAAAAAACATGAATCAAATACACGTGACAAGGCCCGATGCTTTACTTGACTTGGCTTGGTTTGAGAATAGCGTCGTCAATTGCGACGGCGAGTCTTTTAGAAAAGATGCCTTCAACACATTTTTTGGTTAG 1308 0.448 MISMTNMGDGRKVSKSRQSSSSDEEAKTGGEGHLKKGPWTSIEDAILVDYVTKHGEGNWNAVQRNSGLARCGKSCRLRWANHLRPDLKKGAFTEEEERRIIELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRMQRSGLPIYPPDICFRVMHGNQESQNVGRLTDGVNQHDDLSQTDTLNIPELDFKHVKIPLDPSIFDIPENSMFEQSSDSSHGYNMFPIMHPAKRLRESAEIMQYGPVYEEDYMSDEITNQFHGNTCCSSSSSMPLSGGMKLELPSLQYLETQQGIWDTPASPLPSLESVDTLSSGLLEPIMYQPMKHFQVQETPDEAVKCKPEWDESGEPYSPLAQSSASVLTMCSPDGPQSVENSDHNIKHELGTEFPTYCSGKDEKNMNQIHVTRPDALLDLAWFENSVVNCDGESFRKDAFNTFFG* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0054 435 Gene3D - 35 88 - -
Ahy4g0054 435 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 18 431 - -
Ahy4g0054 435 Pfam Myb-like DNA-binding domain 36 83 IPR001005 -
Ahy4g0054 435 Pfam Myb-like DNA-binding domain 89 132 IPR001005 -
Ahy4g0054 435 MobiDBLite consensus disorder prediction 16 32 - -
Ahy4g0054 435 MobiDBLite consensus disorder prediction 1 15 - -
Ahy4g0054 435 MobiDBLite consensus disorder prediction 1 37 - -
Ahy4g0054 435 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 138 IPR017930 -
Ahy4g0054 435 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 18 431 - -
Ahy4g0054 435 ProSiteProfiles Myb-like domain profile. 31 83 IPR001005 -
Ahy4g0054 435 CDD SANT 38 83 IPR001005 -
Ahy4g0054 435 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 83 IPR017930 -
Ahy4g0054 435 SMART sant 35 85 IPR001005 -
Ahy4g0054 435 SMART sant 88 136 IPR001005 -
Ahy4g0054 435 CDD SANT 103 132 IPR001005 -
Ahy4g0054 435 ProSiteProfiles Myb-like domain profile. 84 134 IPR001005 -
Ahy4g0054 435 Gene3D - 91 163 - -
Ahy4g0054 435 SUPERFAMILY Homeodomain-like 34 130 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0054 Ahy-Chr4 585525 589731 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g0054 13 308 MYB Transcription Factor Family AT2G26960 43.519 2.99e-76 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy4g0054 Myb_DNA-binding 9.30E-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0054 K09422 - gmx:100800658 474.552