Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0023 ATGAAACTCACTGTTAAGACTTTGAAAGGCAGCCATTTCGAAATTAGGGTTCAGCCATCCGACACTATTATGGCTGTCAAGAAGAATATAGAAGATGTGCAAGGCAAAGATAATTACCCATGTGGACAACAGTTGCTTATTCACAATGGCAAGGTTTTGAAAGATGAAACAACATTAGCAGAGAACAAGGTCTCTGAGGATGGTTTTCTTGTTGTTATGCTTAGCAAGAGTAAAACATTGGGTTCAGCAGGGACTTCATCTGCCCAGCCTGCCAGCAATCCACCTGCAGCTGTATCAACCTCAAATTCCACGCCTGCTCCTGAACCGCCTGCACAAACTCACGTGTCTGCAGATACTTATGGTCAGGCTGCTTCAAATTTAGTTGGTGGTAGTAATCTTGAGCAGACTATTCAACAAATTATGGACATGGGAGGTGGCAACTGGGACAGAGATACAGTTACTCGTGCTCTTCGGGCAGCTTATAATAATCCAGAGCGTGCTATAGACTATTTGTACTCTGGTATCCCCGAAGCAGCAGAAGTTGCTGTACCAGTTCCTCAATTCCCAGGTAGTCAGACAACTGAAACAGCTGGGGTCACTGCTGGAGCAGTTCCTGGACTACCTAACTCATCTCCCTTAAATATGTTTCCACAGGAGACAATTTCTGGTGCTGGTCCTGGACTAGGATCTCTTGACTTCCTCAGAAACAATCCCCAGTTTCAAGCATTGCGTTCAATGGTGCAATCAAATCCACAAATTTTACAGCCTGTACTTCAAGAACTTGGAAAGCAGAATCCCAATCTTTTAAGACTCATTCAAGAACATCATGCCGAGTTTCTACAGTTGATAAATGAACCTGTTGAGGGCTCTGAAGGTGATATATTTGACCAGCCTGAGCAGGACATGCCTCATGCCATCAATGTGACTCCAGCTGAGCAGGAGGCAATTGCAAGGCTTGAGGCATTGGGATTTGATAGAGCCTCGGTCATAGAGGCGTTTTTGGCATGTGACCGGGATGAACAATTGGCAGCGAATTACTTATTGGAGAATGCTGGAGATTTTGAGGATTAA 1071 0.4463 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSEDGFLVVMLSKSKTLGSAGTSSAQPASNPPAAVSTSNSTPAPEPPAQTHVSADTYGQAASNLVGGSNLEQTIQQIMDMGGGNWDRDTVTRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQFPGSQTTETAGVTAGAVPGLPNSSPLNMFPQETISGAGPGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPNLLRLIQEHHAEFLQLINEPVEGSEGDIFDQPEQDMPHAINVTPAEQEAIARLEALGFDRASVIEAFLACDRDEQLAANYLLENAGDFED* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0023 356 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Ahy4g0023 356 Pfam XPC-binding domain 231 286 IPR015360 GO:0003684|GO:0006289|GO:0043161
Ahy4g0023 356 SMART ubq_7 1 75 IPR000626 GO:0005515
Ahy4g0023 356 Gene3D - 1 77 - -
Ahy4g0023 356 Gene3D - 221 287 IPR036353 GO:0003684|GO:0006289|GO:0043161
Ahy4g0023 356 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 355 - -
Ahy4g0023 356 SUPERFAMILY Ubiquitin-like 1 86 IPR029071 -
Ahy4g0023 356 CDD UBA1_Rad23_plant 127 176 - -
Ahy4g0023 356 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Ahy4g0023 356 SUPERFAMILY UBA-like 129 181 IPR009060 GO:0005515
Ahy4g0023 356 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 131 174 IPR015940 -
Ahy4g0023 356 SMART uba_6 312 349 IPR015940 -
Ahy4g0023 356 SMART uba_6 133 173 IPR015940 -
Ahy4g0023 356 Pfam UBA/TS-N domain 312 347 IPR015940 -
Ahy4g0023 356 Pfam UBA/TS-N domain 133 171 IPR015940 -
Ahy4g0023 356 PRINTS DNA repair protein Rad23 signature 257 279 IPR004806 GO:0006289
Ahy4g0023 356 PRINTS DNA repair protein Rad23 signature 306 322 IPR004806 GO:0006289
Ahy4g0023 356 PRINTS DNA repair protein Rad23 signature 323 337 IPR004806 GO:0006289
Ahy4g0023 356 PRINTS DNA repair protein Rad23 signature 338 353 IPR004806 GO:0006289
Ahy4g0023 356 TIGRFAM rad23: UV excision repair protein Rad23 1 355 IPR004806 GO:0006289
Ahy4g0023 356 SMART CBM 229 272 IPR006636 -
Ahy4g0023 356 Gene3D - 126 176 - -
Ahy4g0023 356 SUPERFAMILY UBA-like 291 353 IPR009060 GO:0005515
Ahy4g0023 356 MobiDBLite consensus disorder prediction 81 116 - -
Ahy4g0023 356 SUPERFAMILY XPC-binding domain 228 294 IPR036353 GO:0003684|GO:0006289|GO:0043161
Ahy4g0023 356 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 310 350 IPR015940 -
Ahy4g0023 356 PANTHER UBIQUITIN RECEPTOR RAD23A-RELATED 1 355 - -
Ahy4g0023 356 CDD Ubl_Rad23 1 74 - -
Ahy4g0023 356 Gene3D - 303 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0023 Ahy-Chr4 263517 268006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy4g0023 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.541 1.58e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0023 K10839 - gmx:100819019 613.224