Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g4351 ATGGGAATACAGGGTTTGTTGCCGCAGTTGAAATCGATAATGGCTCCGATTCACATAAAGGAGCTTGAGGGGTGCTGTGTTGCGGTGGACACATATTCATGGCTCCACAAAGGCGCACTCTCTTGCAGCACCCACCTCTGCAAAAACATTCCCACAACCAGGCACATTGAGTATTGCATGCATAGAGTGAATTTGCTGCGCCATTTTGGTATTAACCCCATTCTTGTATTTGACGGTGGACTTCTACCCATGAAGGCCGAACAAGAGAATAAGCGTGCCAGGGTAAGAAAGGAAAATTTTGCACGAGCTGTTGAACATGAGTCAAATGGAAATAACACTGCTGCTTTTGAGTGCTACCAGAAAGCTGTTGATATTTCACCTCTCATTGCGCGCGACCTAATTCAGGTATTGAGGCAGGAGAATGTGCAATATATTGTAGCTCCTTATGAGGCTGATGCTCAGATGGCTTTCTTGGCCATTAGTGGACAGGTTGATGCAGTTATAACTGAAGATTCTGATCTTATACCATTTGGATGCCCAAGGATTATCTTCAAAATGGACAAGTTTGGACAAGGAGTTGAGTTTCGGTACTCCATGTTACAGAAGAATAAGGAGCTTTGTTTTGAAGGATTTGACAGGCAAATGCTTCTCGAAATGTGTATCTTGAGTGGCTGCGACTATCTTCAGTCCTTGCCAGGTATGGGCCTGAAAAGAGCTCATGCAATCATTAAAAGATTTAAAAGTTATGACAAGGTTCTTAAGCACTTGAGATACAGTGGTGTTTCTGTGCCTCCCTTATACGAAGAGTCGTTCAGGAAGGCTATATTGACTTTCCACTTTCAACGGGTGTATGATCCAATTAATGAAAACGTTATTCATTTATCGAATATACCTGATGATATTGGTGACGAGTTAGATTTTTTAGGCCCATATCCTTCAATTTTAAGGGGTTCTGTTACCATGTTATATCCGTATAGCACTGCTCTGTTATATTCAATTATCTGA 1005 0.4189 MGIQGLLPQLKSIMAPIHIKELEGCCVAVDTYSWLHKGALSCSTHLCKNIPTTRHIEYCMHRVNLLRHFGINPILVFDGGLLPMKAEQENKRARVRKENFARAVEHESNGNNTAAFECYQKAVDISPLIARDLIQVLRQENVQYIVAPYEADAQMAFLAISGQVDAVITEDSDLIPFGCPRIIFKMDKFGQGVEFRYSMLQKNKELCFEGFDRQMLLEMCILSGCDYLQSLPGMGLKRAHAIIKRFKSYDKVLKHLRYSGVSVPPLYEESFRKAILTFHFQRVYDPINENVIHLSNIPDDIGDELDFLGPYPSILRGSVTMLYPYSTALLYSII* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g4351 334 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Ahy3g4351 334 SMART xpgineu 138 209 IPR006086 GO:0004518
Ahy3g4351 334 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 308 IPR006084 -
Ahy3g4351 334 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Ahy3g4351 334 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Ahy3g4351 334 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Ahy3g4351 334 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Ahy3g4351 334 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Ahy3g4351 334 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 309 IPR036279 -
Ahy3g4351 334 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Ahy3g4351 334 Gene3D - 1 207 - -
Ahy3g4351 334 SMART xpgn3 1 99 IPR006085 GO:0004518
Ahy3g4351 334 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Ahy3g4351 334 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Ahy3g4351 334 PANTHER EXONUCLEASE 1 1 308 IPR032641 GO:0006281|GO:0035312
Ahy3g4351 334 CDD H3TH_EXO1 214 285 IPR037315 GO:0003677|GO:0035312
Ahy3g4351 334 Pfam XPG I-region 141 226 IPR006086 GO:0004518
Ahy3g4351 334 Gene3D - 209 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g4351 Ahy-Chr3 143492116 143493733 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g4351 1 267 Core DNA Replication Machinery Family AT5G26680 28.114 6.80e-21 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g4351 K10746 - gmx:100798062 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4602 13 146401487 146405233 Ahy3g4351 3 143492116 143493733 hybridization