Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g4342 ATGGAATTCAGAATCTTCTTTGCTTTATCAATCATTGCTTTGAGTTGTTTCAGATGGATGAGGTTTGCAGAATCCAAATTACCACAGGAAGAAGTTGATGCTCTTGGAGAAATCACTACCGTGATGGGTGTCACCCACTGGGAATTTGATGGTGATACTTGTCAAATTAAAAAGGTGACATTAGAGCCACCCAGTGAAGCTAAAAGCAGCATTGGTTGTGAGTACCATCCTGAAAAGGACAACTTCTCTCATGTAGTAAGGATTGAGTTCAAATGGTACAATCTTCCTGGCACTCTTCCACCTCAGATGGTTAAGCTTCCTTACCTCAGAGAAATTGATCTTTCTCTCAACTACCTAAATGGTACCATCCCAAAGGAATGGGCTTCAATGAAACTGACAACAATTGCCCTAATGGCTAATCGTTTATCGGGGGAGATTCCTAAGGAGTTGGGAAATATTGAAACTCTAACGAACCTGGACCTTGAAGCAAACCAATTCTCTGGTCATGTACCCTCTCAACTTGGAAATCTGATTAACCTGCAAAGATTGGTTCTAGCATCCAATAATTTGTCTGGGACCCTACCAGAGACATTTGCTCTACTACATAATTTGACAGAGTTTAGGATAAGTGATAATAGTTTCAGTGGAAAAATACCCAGCTTCATTCAGAACTGGAAGCTACTTCAAAGACTAGATATGCATGCAAGTGGACTGGAGGGACCAATCCCATCAAATATATCTCTTTTGAGTAATTTAACTATTTTGAGGATTAGTGACATAGATGGTCCAAGTCAGGCTTTTCCAGTTTTAAGCAGCATGAAGAAAATGAGAAGATTGGTTTTGAGAAACTGCAATATTACTGGAGAGATTCCTAGTGACATCTGGAAACTGGAGAATTTGAAAATGCTGGATGTGAGTTTTAATCAGTTGGTTGGCGAAATTCCAACTATTAAACCTGCAGCACCAATGACTTTTATCTTCCTAACTGGCAACAAACTAACTGGTAATGTACCTGACTCAATCTTGGCGGCGGGAGGCAATGTTGATCTTTCTTATAACAACCTTACGTGGCAAGGACCTGGGCAACCTGCTTGTCAAGATAACTTGAATTTAAACTTAAACTTGTTCCGGAGTTCTTTGGGGACCACAAAATTACAGGCTGTTCTCCCATGTTCAAAGACCTTTAAGTGTCCTAGATACTCAAGCTGTTTGCATGTTAATAGTGGTGGTAAGGATGTAATGATGAAAGAAAATGGTGAAAATATCCTTTATATAGGGGATAGTGTGCCGGGTGGTACTGCTGAATATTATAATGACCATGAAAAGCTTTGGGGCTTTAGCAGCACTGGTGACTTCATGGATGATGATGACATCCAAAATACACGTTACACCAAGGCATTGTCACCTTCAAATTTGTCTGAATTATATGCAACGGCACGAGTGTCCCCTATTTCGCTCACCTATTTCCATTATTGCCTGGAAAATGGGAACTATACAGTAAAGCTCCACTTTGCAGAAATACAGTTTACTAATGATAGGACATGTAACAGTCTTGGGAAACGCTTTTTCAATATCTATATCCAGGATGGACTAGTTTTGAAGGATTTTAACATTGAAGAGAAAGCACATGGTGCTCAAAAACCATATATAGCAACAATTCCTAACGTCAGCGTAACAGACAATATTCTAGAGATCCGACTCTACTATGCTGGCAAGGGAACTGAAAGGATTCCTTATCCTGCAGCTTATGGTCCCCTCATATCAGCTTTCTCTATTGTTTCTAATTCTAAACCTTGTTCAGTCCAAAAGAAAGCAGTGAATTATATAATAGTTGGAGTTGGATTTGGAATTTCAGCTGTTTGCCTAGTCCTTATTATAGTAGGGATCCTTTGGCGGATATTCTTCTTCAAAGGAATAATTAGGACAGAAAAAGGTGTTGATGGACAATATAATCAGACAGGGACATATACATTAGAACAAATTAGAGCTGCCACAAATGATTTCTCTCCTGCTAACAAGATTGGGGAAGGTGGTTTTGGTCCTGTCTACAAGGGTCAGTTATCCGATGGTACTTGGGTAGCAGTCAAACAGCTTTCTTCGAAGTCACGGCAGGGGAATCGTGAATTTTTAAATGAGATAGCCATGATATCTTGTTTGCAACACCCTAATCTTGTGAAACTTTATGGATTTTGCATTGAAAACAATCAACTAATGCTGGTTTATGAGTACATGGAAAATAATAGCCTGGCTCATGCTTTATTCAGCTCAGAGAATCAGCTTAAACTTGATTGGTCAACAAGGCATAGAATCTGTATTGGCATAGCAAAAGGTCTTGCATTTCTTCATGAAGAATCAAGACTCAAGATTGTTCATCGAGATATCAAATCTACTAATGTGTTACTGGATGGGAACTTAAACCCTAAAATATCCGATTTTGGGTTGGCTAGGCTTGATGAAGAGGAAGAGACTCACATCAGCACCAGAGTGGCAGGAACAGTAGGATACATGGCACCGGAATATGCATTATGGGGTCACCTGTCTTACAAGGCTGATGTATACAGTTATGGAATTGTGGTCTTGGAAATTGTCAGTGGAAAGAACAATAAAAATTACATGCCAAGTGATGATTGTTTTTGTCTTTTAGATAAGGCATTTCATCTTCAATTCACTGAAAACATAATGGAACTGGTTGATGAAAGGCTGGGATTAGAGGTGAACCCAACCGAAGCAGAAAACATGGTGAAAGTAGCTCTGCTGTGTACGAATGTATCGCCGTCTCTTAGGCCTACAATGTCAGAGGTTGTGAACATGCTTGAAGATAAAATGAGCATCCCAGATGTTATACCGGAAAATTTTTTTCGTGAAGATTTAAGGCTTAGAGCCATAAGAGACATCTATCAACATGGCGAAAATCAAAGTTTGACTTCAAGCAAAACAGGCAGTTTAATAGGATATTTTGTACCTACTTCTTCCTCAGTCTCTGGCAATGACATGCATGAGATATGCTCAAAATCATAG 3018 0.394 MEFRIFFALSIIALSCFRWMRFAESKLPQEEVDALGEITTVMGVTHWEFDGDTCQIKKVTLEPPSEAKSSIGCEYHPEKDNFSHVVRIEFKWYNLPGTLPPQMVKLPYLREIDLSLNYLNGTIPKEWASMKLTTIALMANRLSGEIPKELGNIETLTNLDLEANQFSGHVPSQLGNLINLQRLVLASNNLSGTLPETFALLHNLTEFRISDNSFSGKIPSFIQNWKLLQRLDMHASGLEGPIPSNISLLSNLTILRISDIDGPSQAFPVLSSMKKMRRLVLRNCNITGEIPSDIWKLENLKMLDVSFNQLVGEIPTIKPAAPMTFIFLTGNKLTGNVPDSILAAGGNVDLSYNNLTWQGPGQPACQDNLNLNLNLFRSSLGTTKLQAVLPCSKTFKCPRYSSCLHVNSGGKDVMMKENGENILYIGDSVPGGTAEYYNDHEKLWGFSSTGDFMDDDDIQNTRYTKALSPSNLSELYATARVSPISLTYFHYCLENGNYTVKLHFAEIQFTNDRTCNSLGKRFFNIYIQDGLVLKDFNIEEKAHGAQKPYIATIPNVSVTDNILEIRLYYAGKGTERIPYPAAYGPLISAFSIVSNSKPCSVQKKAVNYIIVGVGFGISAVCLVLIIVGILWRIFFFKGIIRTEKGVDGQYNQTGTYTLEQIRAATNDFSPANKIGEGGFGPVYKGQLSDGTWVAVKQLSSKSRQGNREFLNEIAMISCLQHPNLVKLYGFCIENNQLMLVYEYMENNSLAHALFSSENQLKLDWSTRHRICIGIAKGLAFLHEESRLKIVHRDIKSTNVLLDGNLNPKISDFGLARLDEEEETHISTRVAGTVGYMAPEYALWGHLSYKADVYSYGIVVLEIVSGKNNKNYMPSDDCFCLLDKAFHLQFTENIMELVDERLGLEVNPTEAENMVKVALLCTNVSPSLRPTMSEVVNMLEDKMSIPDVIPENFFREDLRLRAIRDIYQHGENQSLTSSKTGSLIGYFVPTSSSVSGNDMHEICSKS* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g4342 1005 SUPERFAMILY Protein kinase-like (PK-like) 653 939 IPR011009 -
Ahy3g4342 1005 CDD STKc_IRAK 674 939 - -
Ahy3g4342 1005 SUPERFAMILY L domain-like 79 340 - -
Ahy3g4342 1005 Gene3D Phosphorylase Kinase; domain 1 640 743 - -
Ahy3g4342 1005 PANTHER RECEPTOR-LIKE KINASE IN FLOWERS 1-RELATED 65 979 - -
Ahy3g4342 1005 Gene3D - 405 597 - -
Ahy3g4342 1005 Pfam Leucine rich repeat 155 213 IPR001611 GO:0005515
Ahy3g4342 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 789 801 IPR008271 GO:0004672|GO:0006468
Ahy3g4342 1005 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Ahy3g4342 1005 Gene3D Ribonuclease Inhibitor 197 263 IPR032675 -
Ahy3g4342 1005 Gene3D Ribonuclease Inhibitor 38 196 IPR032675 -
Ahy3g4342 1005 ProSiteProfiles Protein kinase domain profile. 668 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy3g4342 1005 Pfam Protein tyrosine and serine/threonine kinase 672 938 IPR001245 GO:0004672|GO:0006468
Ahy3g4342 1005 Pfam Malectin domain 403 590 IPR021720 -
Ahy3g4342 1005 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 65 979 - -
Ahy3g4342 1005 Gene3D Transferase(Phosphotransferase) domain 1 744 947 - -
Ahy3g4342 1005 SMART serkin_6 668 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy3g4342 1005 Gene3D Ribonuclease Inhibitor 264 404 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g4342 Ahy-Chr3 143426159 143433505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g4342 7 833 Receptor kinase-like Gene Family AT1G29750 59.233 0.0 980
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ahy3g4342 PK_Tyr_Ser-Thr 5.00E-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g4342 - - vra:106779815 1315.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4595 13 146319832 146326491 Ahy3g4342 3 143426159 143433505 hybridization
Ahy3g4342 3 143426159 143433505 Ahy20g0278 20 2944606 2951503 PCT
Ahy3g4342 3 143426159 143433505 Ahy10g0088 10 967974 974905 PCT
Ahy20g0278 20 2944606 2951503 Ahy3g4342 3 143426159 143433505 PCT
Ahy10g0088 10 967974 974905 Ahy3g4342 3 143426159 143433505 PCT