Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g4339 ATGGGTGAGTATTCATCAAGAAGCGGTGATGTTGCTATCTCTGTAACTAGTAAGGAGGAAGCAGGAGGAGGTGGGACCTGCAAAACAGGCAAATATTTTCTTCTGTTTCAGAAGATGGTGGCGGAGTTGGTGGGGACGTATTTCTTGATATTTACAGGGTGCGCAGCGATTGCGGTGAACAACGACTACGGGAAGCAAATAACGCTTCTTGGAATTGCAACTGTTTGGGGATTGGTTGTCATGGTCATCGTTTACTCCGTTGGTCATGTCTCTGGGGCCCATCTCAACCCTGCCGTCACTATTGCTTTTGCCTCCATCACAAAGTTTCCACTCACTCAGGTACCGGCTTATATAGCAGCTGAATTGCTTGGAGCGATCCTAGCAAGCGGAACAGTGAGACTAGTATTTAGTGGGAACCACGTTGAAGTTCAGTTCACAGGAACGTTGCCGAGTGGCTCAAACATCCAATCCTTCGTCATTGAATTCATTATCACTTTTTTCCTTATGTTTGTCATTTGCGCCGTTGCTACCGATAGCAGAGCGGTTGGTACCTTGGCTGGAGTTGCAATCGGGTCTACCATACTAATTAATGTGCTGATTGCAGCGCAAGTGTCAGGAGCATCAATGAACCCAGCAAGGAGTCTAGGACCTGCATTTGTGCACCATGAATACAGAGGAATATGGATATACTTGTTGTCACCCACCATTGGAGCTGTGGCGGCTGCATGGGTCTACAACATACTTAGGGAGAAGAAGGACAAGCCCATCATTCAGATCACCAAGAATGCCTCTTTCAACTGA 801 0.4707 MGEYSSRSGDVAISVTSKEEAGGGGTCKTGKYFLLFQKMVAELVGTYFLIFTGCAAIAVNNDYGKQITLLGIATVWGLVVMVIVYSVGHVSGAHLNPAVTIAFASITKFPLTQVPAYIAAELLGAILASGTVRLVFSGNHVEVQFTGTLPSGSNIQSFVIEFIITFFLMFVICAVATDSRAVGTLAGVAIGSTILINVLIAAQVSGASMNPARSLGPAFVHHEYRGIWIYLLSPTIGAVAAAWVYNILREKKDKPIIQITKNASFN* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g4339 266 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy3g4339 266 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy3g4339 266 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy3g4339 266 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy3g4339 266 PRINTS Major intrinsic protein family signature 228 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy3g4339 266 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy3g4339 266 CDD MIP 37 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy3g4339 266 PANTHER AQUAPORIN NIP2-1 25 265 IPR034294 -
Ahy3g4339 266 Pfam Major intrinsic protein 36 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy3g4339 266 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Ahy3g4339 266 Gene3D Glycerol uptake facilitator protein. 10 257 IPR023271 -
Ahy3g4339 266 SUPERFAMILY Aquaporin-like 33 251 IPR023271 -
Ahy3g4339 266 TIGRFAM MIP: MIP family channel proteins 41 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy3g4339 266 PANTHER NODULIN-26 25 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g4339 Ahy-Chr3 143388314 143392688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g4339 18 265 Major Intrinsic Protein MIP AT5G37820 53.600 2.72e-89 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g4339 K09874 - gmx:547904 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4592 13 146281865 146285183 Ahy3g4339 3 143388314 143392688 hybridization
Ahy3g4339 3 143388314 143392688 Ahy20g0283 20 2973063 2974427 PCT
Ahy3g4339 3 143388314 143392688 Ahy10g0093 10 997258 998935 PCT
Ahy20g0283 20 2973063 2974427 Ahy3g4339 3 143388314 143392688 PCT
Ahy10g0093 10 997258 998935 Ahy3g4339 3 143388314 143392688 PCT