Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g4338 ATGGATGAAGCTCAGAGCAGTTCCAATTCCCTACCACCTTTTCTGGCAAAGACTTATGAGATGGTGGATGATCCTTCCACTGATCCCATTGTTTCTTGGAGTGCCTCTAATAGAAGTTTCGTTGTGTGGAATCCTCCGGATTTTGCTAGGGATTTGCTGCCTAGATTCTTCAAGCACAATAACTTCTCAAGCTTTATCAGGCAGCTGAACACTTATGGTTTTAAGAAGGTTGATCCTGAACAATGGGAATTTGCAAATGATGATTTTGTAAGAGGTCAACCACATCGCATGAAGAATATCCACAGACGAAAACCAGTTCATAGTCATTCTTTACAGAATCTTCAGGCGCAAGCTCCACTGACAGAATCAGAAAGGATGAGTTTACAAGATGAAATAGAGAGGCTTAACCGTGAAAAAGAACAGCTTCTTATGGAGCTACAGAGACATGAACAGGAGTGGCAAGAATATGAGATTCGAATACACTGCTCGAAAGACCGTGTGGAGAAGATGGAGCAGAAGCATCAAAAGATGATCTCTTCTGTTTCCAGTGTACTGCAGAAACCTGGAATTGACTTGAATCAATTGGCATTGCTAGAAACCACAGATAGAAAACGAAGGTTACCAAGAAGTGGCTATCTTAGTGATGAAACTAACATTGAAGATACAACTGAGACCGAACAAATGTTACCCACAGAAAATTCACAGGACACCTCCGTTTTGACAATAATCACAGAGCAGTTGGATCAGCTCGAGTCATCCATGGTATTTTGGGAAACCATTTCAAATGATATTTCTGACACGACCATTCACATTCATTCAAGCTTGGATTTTGATGAATCTACAAGTTGTGCTGATAGTCTGTCTATATCTTGCCCCCTACTAGATATTGAAGTTCTGCCTAAGTCATCTGGAATTGACATGAACTCTGAGCCTGCTTCTGCTCCTGTTTCCGAGCCTGCTTCCGCATCAAAAGAACAAGCTGCCGGCACAACCCCTGTGGTGGTTGGTGTTAATGATGTATTTTGGGAACAATTCTTGACAGAGAATCCTGGTTCATCAGAAGCACAGGAAGTACAATCAGAAAGAAAGTATCATGATACTAGCAAGGGTGAAGGAAAACCTAGTGACCCAGGAAAGTTTTGGTGGAACATGCGAAATACAAGTAATCTTCCAGAACAAATAGGTCATGTTAGTCAAGCAGAAAAAACATAG 1212 0.4142 MDEAQSSSNSLPPFLAKTYEMVDDPSTDPIVSWSASNRSFVVWNPPDFARDLLPRFFKHNNFSSFIRQLNTYGFKKVDPEQWEFANDDFVRGQPHRMKNIHRRKPVHSHSLQNLQAQAPLTESERMSLQDEIERLNREKEQLLMELQRHEQEWQEYEIRIHCSKDRVEKMEQKHQKMISSVSSVLQKPGIDLNQLALLETTDRKRRLPRSGYLSDETNIEDTTETEQMLPTENSQDTSVLTIITEQLDQLESSMVFWETISNDISDTTIHIHSSLDFDESTSCADSLSISCPLLDIEVLPKSSGIDMNSEPASAPVSEPASASKEQAAGTTPVVVGVNDVFWEQFLTENPGSSEAQEVQSERKYHDTSKGEGKPSDPGKFWWNMRNTSNLPEQIGHVSQAEKT* 404
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g4338 403 Coils Coil 111 159 - -
Ahy3g4338 403 Gene3D - 6 104 IPR036388 -
Ahy3g4338 403 MobiDBLite consensus disorder prediction 348 403 - -
Ahy3g4338 403 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 384 IPR027725 -
Ahy3g4338 403 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ahy3g4338 403 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ahy3g4338 403 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ahy3g4338 403 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ahy3g4338 403 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ahy3g4338 403 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
Ahy3g4338 403 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ahy3g4338 403 MobiDBLite consensus disorder prediction 306 328 - -
Ahy3g4338 403 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 1 384 - -
Ahy3g4338 403 MobiDBLite consensus disorder prediction 381 403 - -
Ahy3g4338 403 MobiDBLite consensus disorder prediction 305 329 - -
Ahy3g4338 403 MobiDBLite consensus disorder prediction 358 373 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ahy3g4338 Ahy-Chr3 143374611 143376964 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g4338 7 403 HSF AT4G18880 52.451 1.48e-120 354
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Ahy3g4338 HSF_DNA-bind 9.70E-31 CL0123
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4591 13 146252733 146255115 Ahy3g4338 3 143374611 143376964 hybridization
Ahy3g4338 3 143374611 143376964 Ahy20g0289 20 3018785 3020863 PCT
Ahy3g4338 3 143374611 143376964 Ahy10g0099 10 1025537 1027611 PCT
Ahy20g0289 20 3018785 3020863 Ahy3g4338 3 143374611 143376964 PCT
Ahy10g0099 10 1025537 1027611 Ahy3g4338 3 143374611 143376964 PCT